Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012872.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDX77974 | Canola | cytosol | 99.12 | 99.12 |
| CDY28996 | Canola | cytosol | 97.37 | 97.37 |
| CDY34470 | Canola | cytosol | 46.49 | 91.38 |
| AT3G51030.1 | Thale cress | cytosol | 90.35 | 90.35 |
| KRH76717 | Soybean | endoplasmic reticulum, nucleus | 77.19 | 73.33 |
| VIT_04s0023g02700.t01 | Wine grape | cytosol | 72.81 | 72.17 |
| KRH28739 | Soybean | cytosol | 75.44 | 71.67 |
| PGSC0003DMT400009306 | Potato | cytosol | 73.68 | 71.19 |
| Solyc02g084710.2.1 | Tomato | extracellular | 72.81 | 70.34 |
| GSMUA_Achr4P22400_001 | Banana | cytosol, unclear | 67.54 | 67.54 |
| VIT_18s0001g13250.t01 | Wine grape | cytosol | 65.79 | 65.79 |
| CDY53958 | Canola | cytosol | 62.28 | 60.68 |
| GSMUA_Achr2P17610_001 | Banana | cytosol | 58.77 | 58.77 |
| CDY39355 | Canola | cytosol | 60.53 | 57.98 |
| CDY29406 | Canola | cytosol | 59.65 | 57.14 |
| CDY36029 | Canola | cytosol | 58.77 | 56.78 |
| CDX73752 | Canola | cytosol, mitochondrion | 98.25 | 50.91 |
| CDY43592 | Canola | cytosol | 54.39 | 50.41 |
| CDY32970 | Canola | cytosol | 54.39 | 50.41 |
| VIT_18s0001g13240.t01 | Wine grape | cytosol | 56.14 | 40.51 |
| CDY65333 | Canola | cytosol | 42.98 | 36.84 |
| CDX67442 | Canola | cytosol | 42.11 | 35.82 |
| CDX73940 | Canola | cytosol | 41.23 | 33.57 |
| CDY34646 | Canola | cytosol | 36.84 | 33.33 |
| CDY35999 | Canola | cytosol | 40.35 | 32.86 |
| CDY27290 | Canola | cytosol | 36.84 | 32.81 |
| CDY30901 | Canola | cytosol | 35.96 | 32.03 |
| CDY45144 | Canola | cytosol | 35.96 | 32.03 |
| CDY22165 | Canola | cytosol | 40.35 | 31.51 |
| CDY58647 | Canola | cytosol | 38.6 | 31.43 |
| CDY70695 | Canola | cytosol | 35.96 | 29.71 |
| CDY23543 | Canola | cytosol | 35.96 | 29.29 |
| CDY57101 | Canola | cytosol | 42.11 | 29.09 |
| CDY48387 | Canola | cytosol | 35.96 | 29.08 |
| CDX67647 | Canola | mitochondrion | 37.72 | 28.48 |
| CDY32015 | Canola | mitochondrion | 37.72 | 28.48 |
| CDY67121 | Canola | mitochondrion | 37.72 | 28.29 |
| CDX72138 | Canola | mitochondrion | 36.84 | 28.19 |
| CDY27215 | Canola | mitochondrion | 36.84 | 28.19 |
| CDY03743 | Canola | extracellular | 21.05 | 27.91 |
| CDY48388 | Canola | cytosol | 34.21 | 26.53 |
| CDY11645 | Canola | cytosol, plastid | 35.09 | 26.49 |
| CDY38768 | Canola | cytosol, plastid | 35.09 | 26.49 |
| CDY23544 | Canola | cytosol | 34.21 | 26.35 |
| CDY37032 | Canola | cytosol | 42.11 | 25.67 |
| CDY04457 | Canola | cytosol | 21.05 | 24.49 |
| CDY69984 | Canola | plastid | 36.84 | 22.58 |
| CDY38116 | Canola | plastid | 35.96 | 21.93 |
| CDY27984 | Canola | nucleus | 40.35 | 21.8 |
| CDY53739 | Canola | plastid | 33.33 | 20.99 |
| CDY51539 | Canola | plastid | 32.46 | 20.56 |
| CDY28704 | Canola | plastid | 31.58 | 20.0 |
| CDY00656 | Canola | cytosol | 40.35 | 12.33 |
| CDY11641 | Canola | plastid | 19.3 | 10.63 |
Protein Annotations
| MapMan:10.6.1 | MapMan:18.7.2 | Gene3D:3.40.30.10 | GO:A0A078DQF2 | EnsemblPlants:CDX90669 | ProteinID:CDX90669 |
| ProteinID:CDX90669.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0006662 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 | GO:GO:0045454 |
| EnsemblPlantsGene:GSBRNA2T00151324001 | InterPro:IPR013766 | PFAM:PF00085 | PIRSF:PIRSF000077 | PRINTS:PR00421 | ScanProsite:PS00194 |
| PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF370 | SUPFAM:SSF52833 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf |
| InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | UniParc:UPI000254066D | : | : | : |
Description
BnaA03g41120D
Coordinates
chrLK031863:+:1421876..1423045
Molecular Weight (calculated)
12618.3 Da
IEP (calculated)
4.856
GRAVY (calculated)
0.060
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGEEGQVIA CHTVEAWNEQ LQKGNDSKTL VVVDFTASWC GPCRFIAPFF ADLAKKLPNV IFLKVDIDEL KSVASDWAIE SMPTFMFMKE GKIVDKVVGA
101: QKDELQSTIA KHLA
101: QKDELQSTIA KHLA
001: MASEEGQVIA CHTVETWNEQ LQKANESKTL VVVDFTASWC GPCRFIAPFF ADLAKKLPNV LFLKVDTDEL KSVASDWAIQ AMPTFMFLKE GKILDKVVGA
101: KKDELQSTIA KHLA
101: KKDELQSTIA KHLA
Arabidopsis Description
TRX1Thioredoxin H1 [Source:UniProtKB/Swiss-Prot;Acc:P29448]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.