CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86457
CDY58518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11600.1	CDX86457	AT3G27960.1	21798944
AT4G11600.1	CDY58518	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033140.1-P	Field mustard	mitochondrion, plastid	99.13	99.13
CDY25288	Canola	mitochondrion, plastid	98.69	98.69
CDX86767	Canola	cytosol	69.87	93.57
CDY70265	Canola	cytosol	69.0	92.4
EES11249	Sorghum	cytosol	63.32	86.31
Zm00001d002704_P001	Maize	cytosol	63.32	86.31
AT4G11600.1	Thale cress	mitochondrion	86.9	85.78
TraesCS6D01G228800.1	Wheat	cytosol	62.45	84.62
Os04t0556300-01	Rice	plastid	61.14	83.33
TraesCS2D01G407700.1	Wheat	cytosol	60.7	82.74
TraesCS2B01G429100.1	Wheat	golgi, plastid	60.7	82.74
TraesCS6B01G278100.1	Wheat	cytosol	59.39	80.47
Zm00001d026154_P002	Maize	cytosol	59.83	77.84
Zm00001d029089_P001	Maize	cytosol	54.59	75.3
KXG31059	Sorghum	cytosol	44.54	75.0
CDY60808	Canola	cytosol	42.36	69.29
CDY10812	Canola	cytosol	50.22	68.05
CDY54730	Canola	cytosol	50.22	68.05
Zm00001d029085_P001	Maize	plastid	36.24	68.03
CDY23931	Canola	cytosol	49.78	67.46
CDX84772	Canola	cytosol	49.78	67.46
KXG39415	Sorghum	plastid	57.64	66.33
HORVU6Hr1G063830.2	Barley	plastid	67.69	65.4
CDY25499	Canola	cytosol	47.16	65.06
CDY34354	Canola	cytosol	46.72	64.07
Os02t0664000-01	Rice	extracellular	66.38	63.87
TraesCS6A01G246400.1	Wheat	mitochondrion, plastid	65.94	63.71
CDX80153	Canola	cytosol	47.16	63.53
CDX80155	Canola	cytosol	47.16	63.53
CDY66093	Canola	cytosol	46.72	62.94
CDY27457	Canola	cytosol	38.86	62.68
CDX79424	Canola	cytosol	48.03	62.5
CDX67915	Canola	cytosol	48.03	62.5
CDY72064	Canola	cytosol	46.72	61.49
CDX89171	Canola	cytosol	47.6	61.24
CDY44221	Canola	endoplasmic reticulum	52.4	60.91
CDX83486	Canola	endoplasmic reticulum	52.4	60.91
Zm00001d051392_P001	Maize	mitochondrion	64.63	60.16
CDX93937	Canola	cytosol	47.6	59.89
CDY15038	Canola	cytosol	46.29	56.68
CDY69660	Canola	plastid	53.71	52.79
CDY13458	Canola	plastid	53.28	52.59
CDY01168	Canola	plastid	53.28	52.59
CDX72332	Canola	plastid	52.84	52.16
CDX76773	Canola	plastid	52.4	49.79
CDY07183	Canola	plastid	17.03	31.2

Protein Annotations

MapMan:10.4.2	Gene3D:3.40.30.10	GO:A0A078HL84	UniProt:A0A078HL84	EnsemblPlants:CDY37628	ProteinID:CDY37628
ProteinID:CDY37628.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0004602	GO:GO:0006950
GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0055114
GO:GO:0098869	InterPro:GPX_AS	InterPro:GPX_CS	EnsemblPlantsGene:GSBRNA2T00064278001	InterPro:Glutathione_peroxidase	InterPro:IPR000889
PFAM:PF00255	PIRSF:PIRSF000303	PRINTS:PR01011	ScanProsite:PS00460	ScanProsite:PS00763	PFscan:PS51355
PANTHER:PTHR11592	PANTHER:PTHR11592:SF42	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0004EBFC0D	SEG:seg

Description

BnaCnng08430DGlutathione peroxidase [Source:UniProtKB/TrEMBL;Acc:A0A078HL84]

Coordinates

chrLK032404:+:194750..196482

Molecular Weight (calculated)

25363.2 Da

IEP (calculated)

9.716

GRAVY (calculated)

-0.308

Length

229 amino acids

Sequence
(BLAST)

001: MLRSSFRLLY ITRTNLLVRA SPSSLSRLPS KFSSAKQLVR SHHQIPLSTT GAKLSRSEHS MAASSEPKSI YDFTVKDAKG NDVDLSTYKG KVLLIVNVAS
101: QCGLTNSNYT ELAQLYQKYK DHGFEILAFP CNQFGNQEPG SNEEIVQFAC TRFKAEYPIF DKVDVNGDSA APIYKFLKSS KGGLFGDGIK WNFAKFLVDK
201: DGNVVDRYAP TTSPLSIEKD LKKLLGVTA

Best Arabidopsis Sequence Match ( AT4G11600.1 )
(BLAST)

001: MLRSSIRLLY IRRTSPLLRS LSSSSSSSSS KRFDSAKPLF NSHRIISLPI STTGAKLSRS EHSMAASSEP KSLYDFTVKD AKGNDVDLSI YKGKVLLIVN
101: VASQCGLTNS NYTELAQLYE KYKGHGFEIL AFPCNQFGNQ EPGTNEEIVQ FACTRFKAEY PIFDKVDVNG DKAAPVYKFL KSSKGGLFGD GIKWNFAKFL
201: VDKDGNVVDR FAPTTSPLSI EKDVKKLLGV TA

Arabidopsis Description

GPX6Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O48646]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.