Factsheet for Zm00001d026154_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017793_P001
Zm00001d051589_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11600.1	Zm00001d017793_P001	AT3G27960.1	21798944
AT4G11600.1	Zm00001d051589_P001	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11249	Sorghum	cytosol	90.91	95.24
Zm00001d002704_P001	Maize	cytosol	88.64	92.86
TraesCS2D01G407700.1	Wheat	cytosol	88.07	92.26
Os04t0556300-01	Rice	plastid	86.93	91.07
TraesCS2B01G429100.1	Wheat	golgi, plastid	86.93	91.07
Bra035211.1-P	Field mustard	cytosol	79.55	81.87
CDX86767	Canola	cytosol	79.55	81.87
CDY70265	Canola	cytosol	78.98	81.29
Zm00001d029089_P001	Maize	cytosol	71.59	75.9
Zm00001d029085_P001	Maize	plastid	51.14	73.77
Zm00001d047448_P002	Maize	extracellular, mitochondrion, plasma membrane	60.23	62.35
Zm00001d051392_P001	Maize	mitochondrion	86.93	62.2
CDY37628	Canola	mitochondrion, plastid	77.84	59.83
CDY25288	Canola	mitochondrion, plastid	77.84	59.83
Bra033140.1-P	Field mustard	mitochondrion, plastid	77.84	59.83
AT4G11600.1	Thale cress	mitochondrion	77.84	59.05
Zm00001d037079_P001	Maize	plastid	65.91	50.43

Protein Annotations

MapMan:10.4.2	EntrezGene:100280060	Gene3D:3.40.30.10	ProteinID:AAS82602.1	ProteinID:AQK45733.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004601	GO:GO:0004602	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	GO:GO:0098869	InterPro:GPX_AS
InterPro:GPX_CS	InterPro:Glutathione_peroxidase	InterPro:IPR000889	PFAM:PF00255	PIRSF:PIRSF000303	PRINTS:PR01011
ScanProsite:PS00460	ScanProsite:PS00763	PFscan:PS51355	PANTHER:PTHR11592	PANTHER:PTHR11592:SF42	UniProt:Q7FS88
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0000352859	EnsemblPlantsGene:Zm00001d026154	EnsemblPlants:Zm00001d026154_P002	EnsemblPlants:Zm00001d026154_T002

Description

Glutathione peroxidase

Coordinates

chr10:-:139926048..139927942

Molecular Weight (calculated)

19376.0 Da

IEP (calculated)

8.188

GRAVY (calculated)

-0.235

Length

176 amino acids

Sequence
(BLAST)

001: MAAASSATSV HDFTVKDSSG KDVDLSVYRG KVLLIVNVAS QCGLTNSNYT QQAQLYEKYK NQGLFLIHCS CFEILAFPCN QFGGQEPGTN EEIAQFACTR
101: FKADYPIFDK VDVNGNNAAP IYKFLKSSKG GLFGDSIKWN FSKFLVDKEG RVVDRYAPTT SPLSIEKDIK KLLGSS

Best Arabidopsis Sequence Match ( AT4G11600.1 )
(BLAST)

001: MLRSSIRLLY IRRTSPLLRS LSSSSSSSSS KRFDSAKPLF NSHRIISLPI STTGAKLSRS EHSMAASSEP KSLYDFTVKD AKGNDVDLSI YKGKVLLIVN
101: VASQCGLTNS NYTELAQLYE KYKGHGFEIL AFPCNQFGNQ EPGTNEEIVQ FACTRFKAEY PIFDKVDVNG DKAAPVYKFL KSSKGGLFGD GIKWNFAKFL
201: VDKDGNVVDR FAPTTSPLSI EKDVKKLLGV TA

Arabidopsis Description

GPX6Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O48646]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.