CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05647

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11600.1	EES05647	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002704_P001	Maize	cytosol	97.62	97.62
TraesCS2D01G407700.1	Wheat	cytosol	95.83	95.83
Os04t0556300-01	Rice	plastid	95.24	95.24
TraesCS2B01G429100.1	Wheat	golgi, plastid	94.64	94.64
Zm00001d026154_P002	Maize	cytosol	95.24	90.91
Bra035211.1-P	Field mustard	cytosol	87.5	85.96
CDX86767	Canola	cytosol	87.5	85.96
CDY70265	Canola	cytosol	86.9	85.38
KXG31059	Sorghum	cytosol	65.48	80.88
EES11677	Sorghum	cytosol	74.4	73.1
KXG39415	Sorghum	plastid	81.55	68.84
CDY37628	Canola	mitochondrion, plastid	86.31	63.32
CDY25288	Canola	mitochondrion, plastid	86.31	63.32
Bra033140.1-P	Field mustard	mitochondrion, plastid	86.31	63.32
AT4G11600.1	Thale cress	mitochondrion	85.12	61.64
OQU83353	Sorghum	endoplasmic reticulum	69.64	57.07
KXG39330	Sorghum	cytosol	64.29	54.55
EER87981	Sorghum	plastid	71.43	51.72

Protein Annotations

MapMan:10.4.2	Gene3D:3.40.30.10	EntrezGene:8056585	ProteinID:AAT42166.1	EnsemblPlants:EES11249	ProteinID:EES11249
ProteinID:EES11249.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0004602	GO:GO:0006950
GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0055114
GO:GO:0098869	InterPro:GPX_AS	InterPro:GPX_CS	InterPro:Glutathione_peroxidase	InterPro:IPR000889	PFAM:PF00255
PIRSF:PIRSF000303	PRINTS:PR01011	ScanProsite:PS00460	ScanProsite:PS00763	PFscan:PS51355	PANTHER:PTHR11592
PANTHER:PTHR11592:SF42	UniProt:Q6JAG4	EnsemblPlantsGene:SORBI_3006G173900	SUPFAM:SSF52833	unigene:Sbi.7722	InterPro:Thioredoxin-like_sf
UniParc:UPI00003B02AE	RefSeq:XP_002446921.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:52991701..52993672

Molecular Weight (calculated)

18445.8 Da

IEP (calculated)

7.180

GRAVY (calculated)

-0.293

Length

168 amino acids

Sequence
(BLAST)

001: MAAASSATSV HDFTVKDASG KDVDLSTYKG KVLLIVNVAS QCGLTNSNYT ELAQLYEKYK DQGFEILAFP CNQFGGQEPG TNEEIVQFAC TRFKAEYPIF
101: DKVDVNGNNA APIYKFLKSS KGGLFGDSIK WNFSKFLVDK EGRVVDRYAP TTSPLSIEKD IKKLLGSS

Best Arabidopsis Sequence Match ( AT4G11600.1 )
(BLAST)

001: MLRSSIRLLY IRRTSPLLRS LSSSSSSSSS KRFDSAKPLF NSHRIISLPI STTGAKLSRS EHSMAASSEP KSLYDFTVKD AKGNDVDLSI YKGKVLLIVN
101: VASQCGLTNS NYTELAQLYE KYKGHGFEIL AFPCNQFGNQ EPGTNEEIVQ FACTRFKAEY PIFDKVDVNG DKAAPVYKFL KSSKGGLFGD GIKWNFAKFL
201: VDKDGNVVDR FAPTTSPLSI EKDVKKLLGV TA

Arabidopsis Description

GPX6Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O48646]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.