Factsheet for Bra033140.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 6
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra025315.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11600.1	Bra025315.1-P	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25288	Canola	mitochondrion, plastid	99.56	99.56
CDY37628	Canola	mitochondrion, plastid	99.13	99.13
Bra035211.1-P	Field mustard	cytosol	69.87	93.57
EES11249	Sorghum	cytosol	63.32	86.31
Zm00001d002704_P001	Maize	cytosol	63.32	86.31
AT4G11600.1	Thale cress	mitochondrion	87.34	86.21
TraesCS6D01G228800.1	Wheat	cytosol	62.45	84.62
Os04t0556300-01	Rice	plastid	61.14	83.33
TraesCS2D01G407700.1	Wheat	cytosol	60.7	82.74
TraesCS2B01G429100.1	Wheat	golgi, plastid	60.7	82.74
TraesCS6B01G278100.1	Wheat	cytosol	59.39	80.47
Zm00001d026154_P002	Maize	cytosol	59.83	77.84
Zm00001d029089_P001	Maize	cytosol	54.59	75.3
KXG31059	Sorghum	cytosol	44.54	75.0
Bra018232.1-P	Field mustard	cytosol	50.22	68.05
Zm00001d029085_P001	Maize	plastid	36.24	68.03
Bra022853.1-P	Field mustard	cytosol	49.78	67.46
KXG39415	Sorghum	plastid	57.64	66.33
HORVU6Hr1G063830.2	Barley	plastid	68.12	65.82
TraesCS6A01G246400.1	Wheat	mitochondrion, plastid	66.38	64.14
Os02t0664000-01	Rice	extracellular	66.38	63.87
Bra004409.1-P	Field mustard	cytosol	47.16	63.53
Bra000302.1-P	Field mustard	endoplasmic reticulum	52.4	60.91
Zm00001d051392_P001	Maize	mitochondrion	64.63	60.16
Bra007819.1-P	Field mustard	plastid	53.71	52.79
Bra023978.1-P	Field mustard	plastid	53.28	52.59
Bra021456.1-P	Field mustard	cytosol	44.98	50.24
Bra003522.1-P	Field mustard	cytosol	46.29	44.73
Bra037370.1-P	Field mustard	extracellular, plastid	15.28	38.89

Protein Annotations

MapMan:10.4.2	Gene3D:3.40.30.10	EnsemblPlantsGene:Bra033140	EnsemblPlants:Bra033140.1	EnsemblPlants:Bra033140.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004601	GO:GO:0004602	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0005886	GO:GO:0006950
GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628
GO:GO:0009651	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0046686	GO:GO:0048046
GO:GO:0055114	GO:GO:0098869	InterPro:GPX_AS	InterPro:GPX_CS	InterPro:Glutathione_peroxidase	InterPro:IPR000889
UniProt:M4EWF6	PFAM:PF00255	PIRSF:PIRSF000303	PRINTS:PR01011	ScanProsite:PS00460	ScanProsite:PS00763
PFscan:PS51355	PANTHER:PTHR11592	PANTHER:PTHR11592:SF42	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI00025471F6
SEG:seg	:	:	:	:	:

Description

AT4G11600 (E=4e-107) ATGPX6, PHGPX, LSC803 | ATGPX6 (GLUTATHIONE PEROXIDASE 6); glutathione peroxidase

Coordinates

chrA02:-:16888984..16890212

Molecular Weight (calculated)

25263.1 Da

IEP (calculated)

9.585

GRAVY (calculated)

-0.284

Length

229 amino acids

Sequence
(BLAST)

001: MLRSSFRLLY ITRTNLLVRA SPSSLSRLPS KFSSAKPLVS SHHQIPLSTT GAKLSRSEHS MAASSEPKSI YDFTVKDAKG NDVDLSTYKG KVLLIVNVAS
101: QCGLTNSNYT ELAQLYQKYK DHGFEILAFP CNQFGNQEPG SNEEIVQFAC TRFKAEYPIF DKVDVNGDSA APIYKFLKSS KGGLFGDGIK WNFAKFLVDK
201: DGNVVDRYAP TTSPLSIEKD LKKLLGVTA

Best Arabidopsis Sequence Match ( AT4G11600.1 )
(BLAST)

001: MLRSSIRLLY IRRTSPLLRS LSSSSSSSSS KRFDSAKPLF NSHRIISLPI STTGAKLSRS EHSMAASSEP KSLYDFTVKD AKGNDVDLSI YKGKVLLIVN
101: VASQCGLTNS NYTELAQLYE KYKGHGFEIL AFPCNQFGNQ EPGTNEEIVQ FACTRFKAEY PIFDKVDVNG DKAAPVYKFL KSSKGGLFGD GIKWNFAKFL
201: VDKDGNVVDR FAPTTSPLSI EKDVKKLLGV TA

Arabidopsis Description

GPX6Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O48646]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.