Factsheet for Zm00001d051392_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
mitochondrion: 27297264
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017793_P001
Zm00001d051589_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11600.1	Zm00001d017793_P001	AT3G27960.1	21798944
AT4G11600.1	Zm00001d051589_P001	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G228800.1	Wheat	cytosol	65.45	95.27
Zm00001d002704_P001	Maize	cytosol	64.23	94.05
TraesCS6B01G278100.1	Wheat	cytosol	63.01	91.72
Zm00001d026154_P002	Maize	cytosol	62.2	86.93
Bra035211.1-P	Field mustard	cytosol	58.54	84.21
CDX86767	Canola	cytosol	58.54	84.21
CDY70265	Canola	cytosol	58.13	83.63
Os02t0664000-01	Rice	extracellular	80.49	83.19
KXG31059	Sorghum	cytosol	45.94	83.09
HORVU6Hr1G063830.2	Barley	plastid	77.64	80.59
TraesCS6A01G246400.1	Wheat	mitochondrion, plastid	76.83	79.75
Zm00001d029089_P001	Maize	cytosol	53.66	79.52
Zm00001d029085_P001	Maize	plastid	35.77	72.13
AT4G11600.1	Thale cress	mitochondrion	61.79	65.52
Bra033140.1-P	Field mustard	mitochondrion, plastid	60.16	64.63
CDY37628	Canola	mitochondrion, plastid	60.16	64.63
CDY25288	Canola	mitochondrion, plastid	60.16	64.63
Zm00001d047448_P002	Maize	extracellular, mitochondrion, plasma membrane	44.31	64.12
Zm00001d037079_P001	Maize	plastid	52.44	56.09

Protein Annotations

MapMan:10.4.2	Gene3D:3.40.30.10	ProteinID:AQK54126.1	UniProt:B4FRF0	EMBL:BT039688	GO:GO:0003674
GO:GO:0003824	GO:GO:0004601	GO:GO:0004602	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	GO:GO:0098869	InterPro:GPX_AS
InterPro:GPX_CS	InterPro:Glutathione_peroxidase	InterPro:IPR000889	PFAM:PF00255	PIRSF:PIRSF000303	PRINTS:PR01011
ScanProsite:PS00460	ScanProsite:PS00763	PFscan:PS51355	PANTHER:PTHR11592	PANTHER:PTHR11592:SF42	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	UniParc:UPI00017B8177	EnsemblPlantsGene:Zm00001d051392	EnsemblPlants:Zm00001d051392_P001	EnsemblPlants:Zm00001d051392_T001	SEG:seg

Description

Glutathione peroxidase

Coordinates

chr4:+:156972673..156976747

Molecular Weight (calculated)

26817.1 Da

IEP (calculated)

8.919

GRAVY (calculated)

-0.138

Length

246 amino acids

Sequence
(BLAST)

001: MPPRPVPLFS RLRFRLPSCA AVSISTPPSS AAPLHYGHRT PLASPFPLSP PCPRILRAAV AVSSLDLRPI TGGFALFSMA AASSATSVHD FTVKDASGKD
101: VDLSTYKGKV LLIVNVASQC GLTNSNYTEL SQLYEKYKDQ GFEILAFPCN QFGGQEPGTN EEIVQFACTR FKAEYPIFDK VDVNGDNTAP IYKFLKSSKG
201: SLFGDNIKWN FSKFLVDKEG HVVERYAPTT SPLSIEKDIK KLLGSS

Best Arabidopsis Sequence Match ( AT4G11600.1 )
(BLAST)

001: MLRSSIRLLY IRRTSPLLRS LSSSSSSSSS KRFDSAKPLF NSHRIISLPI STTGAKLSRS EHSMAASSEP KSLYDFTVKD AKGNDVDLSI YKGKVLLIVN
101: VASQCGLTNS NYTELAQLYE KYKGHGFEIL AFPCNQFGNQ EPGTNEEIVQ FACTRFKAEY PIFDKVDVNG DKAAPVYKFL KSSKGGLFGD GIKWNFAKFL
201: VDKDGNVVDR FAPTTSPLSI EKDVKKLLGV TA

Arabidopsis Description

GPX6Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O48646]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.