Factsheet for Zm00001d047448_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 23353019
mitochondrion: 27297264

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010602_P001
Zm00001d038447_P001
Zm00001d043015_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63080.1	Zm00001d010602_P001	AT1G07000.1	21798944
AT3G63080.1	Zm00001d038447_P001	AT1G07000.1	21798944
AT3G63080.1	Zm00001d043015_P001	AT1G07000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0358100-01	Rice	plasma membrane	89.41	89.94
TraesCS4A01G142000.1	Wheat	cytosol	84.12	83.14
TraesCS4B01G152800.1	Wheat	cytosol	90.0	81.82
TraesCS4D01G162000.1	Wheat	plastid	90.0	81.82
KXG39330	Sorghum	cytosol	90.0	77.27
CDY66093	Canola	cytosol	76.47	76.47
CDX80153	Canola	cytosol	75.88	75.88
CDX80155	Canola	cytosol	75.88	75.88
Bra004409.1-P	Field mustard	cytosol	75.88	75.88
HORVU4Hr1G035380.1	Barley	cytosol	90.59	75.86
CDY27457	Canola	cytosol	62.94	75.35
AT2G48150.1	Thale cress	cytosol	75.29	75.29
CDY72064	Canola	cytosol	75.88	74.14
GSMUA_Achr5P07930_001	Banana	cytosol	74.12	74.12
VIT_07s0104g00320.t01	Wine grape	cytosol	73.53	73.53
Solyc09g064850.2.1	Tomato	nucleus	73.53	73.53
AT3G63080.1	Thale cress	cytosol	73.53	72.25
KRH67169	Soybean	cytosol	71.76	71.76
CDX79424	Canola	cytosol	74.12	71.59
CDX67915	Canola	cytosol	74.12	71.59
CDX89171	Canola	cytosol	73.53	70.22
KRG95489	Soybean	cytosol	70.0	68.79
CDX93937	Canola	cytosol	73.53	68.68
KRH71458	Soybean	endoplasmic reticulum	67.06	67.06
CDY15038	Canola	cytosol	72.94	66.31
KRH31991	Soybean	cytosol	65.88	65.88
Zm00001d002704_P001	Maize	cytosol	64.12	64.88
Zm00001d029089_P001	Maize	cytosol	58.82	60.24
Zm00001d026154_P002	Maize	cytosol	62.35	60.23
Bra021456.1-P	Field mustard	cytosol	72.35	60.0
Zm00001d029085_P001	Maize	plastid	41.18	57.38
Bra003522.1-P	Field mustard	cytosol	71.76	51.48
Zm00001d037079_P001	Maize	plastid	60.59	44.78
Zm00001d051392_P001	Maize	mitochondrion	64.12	44.31

Protein Annotations

MapMan:10.4.2	EntrezGene:100283257	Gene3D:3.40.30.10	ProteinID:AQL06465.1	UniProt:B6T5N2	EMBL:EU960297
EMBL:EU964052	EMBL:EU965720	EMBL:EU971245	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601
GO:GO:0004602	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0055114	GO:GO:0098869	InterPro:GPX_AS	InterPro:GPX_CS	InterPro:Glutathione_peroxidase
InterPro:IPR000889	PFAM:PF00255	PIRSF:PIRSF000303	PRINTS:PR01011	ScanProsite:PS00460	ScanProsite:PS00763
PFscan:PS51355	PANTHER:PTHR11592	PANTHER:PTHR11592:SF17	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0000E64715
EnsemblPlantsGene:Zm00001d047448	EnsemblPlants:Zm00001d047448_P002	EnsemblPlants:Zm00001d047448_T002	:	:	:

Description

Glutathione peroxidase

Coordinates

chr9:-:130415702..130418514

Molecular Weight (calculated)

19287.0 Da

IEP (calculated)

7.903

GRAVY (calculated)

-0.459

Length

170 amino acids

Sequence
(BLAST)

001: MGAAESVPET SIHEFTVKDC NGKEVSLETY KGKVLLVVNV ASKCGFTETN YTQLTELYQK YRDKDFEILA FPCNQFLRQE PGTDQQIQDF ACTRFKAEYP
101: VFQKVRVNGP DAAPVYKFLK ASKPGLFGSS RIKWNFTKFL VDKDGKVIER YGTSTAPMAI EKDIQKALEE

Best Arabidopsis Sequence Match ( AT2G48150.1 )
(BLAST)

001: MGASASVPER SVHQFTVKDS SGKDLNMSIY QGKVLLIVNV ASKCGFTETN YTQLTELYRK YKDQDFEILA FPCNQFLYQE PGTSQEAHEF ACERFKAEYP
101: VFQKVRVNGQ NAAPIYKFLK ASKPTFLGSR IKWNFTKFLV GKDGLVIDRY GTMVTPLSIE KDIKKALEDA

Arabidopsis Description

GPX4Probable glutathione peroxidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L910]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.