Factsheet for TraesCS4D01G162000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 24098330

gfp PMID: 24098330 doi

CZ Zhai, L Zhao, LJ Yin, M Chen, QY Wang, LC Li, ZS Xu, YZ Ma

Institute of Crop Science, Chinese Academy of Agricultural Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Key Laboratory of Biology and Genetic Improvement of Triticeae Crops, Ministry of Agriculture, Beijing, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G297800.1
TraesCS1B01G307200.1
TraesCS1D01G293400.1
TraesCS3A01G348200.1
TraesCS3B01G380100.1
TraesCS3D01G341800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63080.1	TraesCS1A01G297800.1	AT1G07000.1	21798944
AT3G63080.1	TraesCS1B01G307200.1	AT1G07000.1	21798944
AT3G63080.1	TraesCS1D01G293400.1	AT1G07000.1	21798944
AT3G63080.1	TraesCS3A01G348200.1	AT1G07000.1	21798944
AT3G63080.1	TraesCS3B01G380100.1	AT1G07000.1	21798944
AT3G63080.1	TraesCS3D01G341800.1	AT1G07000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G152800.1	Wheat	cytosol	99.47	99.47
TraesCS4A01G142000.1	Wheat	cytosol	90.91	98.84
Os03t0358100-01	Rice	plasma membrane	81.82	90.53
Zm00001d047448_P002	Maize	extracellular, mitochondrion, plasma membrane	81.82	90.0
HORVU4Hr1G035380.1	Barley	cytosol	93.05	85.71
CDY66093	Canola	cytosol	69.52	76.47
CDX80153	Canola	cytosol	68.98	75.88
CDX80155	Canola	cytosol	68.98	75.88
Bra004409.1-P	Field mustard	cytosol	68.98	75.88
AT2G48150.1	Thale cress	cytosol	68.45	75.29
CDY27457	Canola	cytosol	56.68	74.65
CDY72064	Canola	cytosol	68.98	74.14
KXG39330	Sorghum	cytosol	77.01	72.73
GSMUA_Achr5P07930_001	Banana	cytosol	65.78	72.35
VIT_07s0104g00320.t01	Wine grape	cytosol	64.17	70.59
Solyc09g064850.2.1	Tomato	nucleus	64.17	70.59
KRH67169	Soybean	cytosol	64.17	70.59
CDX79424	Canola	cytosol	66.31	70.45
CDX67915	Canola	cytosol	65.78	69.89
AT3G63080.1	Thale cress	cytosol	64.17	69.36
CDX89171	Canola	cytosol	64.17	67.42
KRG95489	Soybean	cytosol	62.03	67.05
CDY15038	Canola	cytosol	66.31	66.31
CDX93937	Canola	cytosol	63.64	65.38
TraesCS6D01G228800.1	Wheat	cytosol	58.82	65.09
TraesCS2D01G407700.1	Wheat	cytosol	58.29	64.88
KRH71458	Soybean	endoplasmic reticulum	58.82	64.71
TraesCS2D01G598000.1	Wheat	cytosol	58.29	63.74
KRH31991	Soybean	cytosol	57.22	62.94
Bra021456.1-P	Field mustard	cytosol	65.78	60.0
Bra003522.1-P	Field mustard	cytosol	65.78	51.9
TraesCS7D01G152400.1	Wheat	plastid	54.55	44.54

Protein Annotations

MapMan:10.4.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004602	GO:GO:0006950
GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0055114	InterPro:GPX_AS	InterPro:GPX_CS
InterPro:Glutathione_peroxidase	InterPro:IPR000889	PFAM:PF00255	PIRSF:PIRSF000303	PRINTS:PR01011	ScanProsite:PS00460
ScanProsite:PS00763	PFscan:PS51355	PANTHER:PTHR11592	PANTHER:PTHR11592:SF17	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
EnsemblPlantsGene:TraesCS4D01G162000	EnsemblPlants:TraesCS4D01G162000.1	TIGR:cd00340	:	:	:

Description

No Description!

Coordinates

chr4D:-:245094986..245109248

Molecular Weight (calculated)

21331.1 Da

IEP (calculated)

7.090

GRAVY (calculated)

-0.664

Length

187 amino acids

Sequence
(BLAST)

001: MGASESVPET SVHEFTVKDC NGKEVCLDTY KGKVLLIVNV ASKCGFTETN YTQLTELYQK YREKDFEILA FPCNQFLRQE PGSDQQIQDF ACTRFKAEYP
101: VFQKVRVNGP DAAPLYKFLK ASKPGLFGSR IKWNFTKFLV DKNGKVINRY ATATTPFSFE KDIQKALEEE PSDSQTKKEE ESSDSQK

Best Arabidopsis Sequence Match ( AT2G48150.1 )
(BLAST)

001: MGASASVPER SVHQFTVKDS SGKDLNMSIY QGKVLLIVNV ASKCGFTETN YTQLTELYRK YKDQDFEILA FPCNQFLYQE PGTSQEAHEF ACERFKAEYP
101: VFQKVRVNGQ NAAPIYKFLK ASKPTFLGSR IKWNFTKFLV GKDGLVIDRY GTMVTPLSIE KDIKKALEDA

Arabidopsis Description

GPX4Probable glutathione peroxidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L910]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.