Factsheet for Os03t0358100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
golgi: 25047511
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0827500-01
Os01t0827600-01
Os05t0473500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63080.1	Os01t0827500-01	AT1G07000.1	21798944
AT3G63080.1	Os01t0827600-01	AT1G07000.1	21798944
AT3G63080.1	Os05t0473500-01	AT1G07000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047448_P002	Maize	extracellular, mitochondrion, plasma membrane	89.94	89.41
TraesCS4D01G162000.1	Wheat	plastid	90.53	81.82
TraesCS4B01G152800.1	Wheat	cytosol	90.53	81.82
TraesCS4A01G142000.1	Wheat	cytosol	82.25	80.81
HORVU4Hr1G035380.1	Barley	cytosol	91.12	75.86
KXG39330	Sorghum	cytosol	86.98	74.24
CDY66093	Canola	cytosol	74.56	74.12
CDX80153	Canola	cytosol	73.37	72.94
CDX80155	Canola	cytosol	73.37	72.94
Bra004409.1-P	Field mustard	cytosol	73.37	72.94
AT2G48150.1	Thale cress	cytosol	73.37	72.94
GSMUA_Achr5P07930_001	Banana	cytosol	72.78	72.35
CDY27457	Canola	cytosol	60.35	71.83
CDY72064	Canola	cytosol	73.37	71.26
VIT_07s0104g00320.t01	Wine grape	cytosol	70.41	70.0
Solyc09g064850.2.1	Tomato	nucleus	69.82	69.41
KRH67169	Soybean	cytosol	69.82	69.41
AT3G63080.1	Thale cress	cytosol	71.01	69.36
CDX79424	Canola	cytosol	71.6	68.75
CDX67915	Canola	cytosol	71.6	68.75
KRG95489	Soybean	cytosol	68.64	67.05
CDX89171	Canola	cytosol	69.82	66.29
CDX93937	Canola	cytosol	69.82	64.84
CDY15038	Canola	cytosol	71.01	64.17
KRH71458	Soybean	endoplasmic reticulum	63.91	63.53
Os04t0556300-01	Rice	plastid	62.13	62.5
KRH31991	Soybean	cytosol	62.72	62.35
Bra021456.1-P	Field mustard	cytosol	70.41	58.05
Os11t0284900-01	Rice	cytosol	44.38	52.08
Bra003522.1-P	Field mustard	cytosol	68.64	48.95
Os04t0683850-00	Rice	cytosol	30.77	46.85
Os02t0664000-01	Rice	extracellular	62.13	44.12
Os06t0185900-01	Rice	plastid	58.58	42.31

Protein Annotations

MapMan:10.4.2	Gene3D:3.40.30.10	EntrezGene:4332876	ProteinID:ABF96054.1	ProteinID:BAF12059.1	ProteinID:BAS84261.1
ProteinID:EAZ26982.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0004602	GO:GO:0006950
GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0055114
GO:GO:0098869	InterPro:GPX_AS	InterPro:GPX_CS	InterPro:Glutathione_peroxidase	InterPro:IPR000889	EnsemblPlantsGene:Os03g0358100
EnsemblPlants:Os03t0358100-01	PFAM:PF00255	PIRSF:PIRSF000303	PRINTS:PR01011	ScanProsite:PS00460	ScanProsite:PS00763
PFscan:PS51355	PANTHER:PTHR11592	PANTHER:PTHR11592:SF17	UniProt:Q10L56	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
UniParc:UPI00000A0363	RefSeq:XP_015632791.1	:	:	:	:

Description

PHOSPHOLIPID HYDROPEROXIDE GLUTATHIONE PEROXIDASESimilar to Glutathione peroxidase. (Os03t0358100-01)

Coordinates

chr3:+:13879058..13882301

Molecular Weight (calculated)

19235.0 Da

IEP (calculated)

8.870

GRAVY (calculated)

-0.426

Length

169 amino acids

Sequence
(BLAST)

001: MGAAESVPET SIHEFTVKDC NGKEVSLEMY KGKVLIVVNV ASKCGFTETN YTQLTELYQK HRDKDFEILA FPCNQFLRQE PGSDQQIKDF ACTRFKAEYP
101: VFQKVRVNGP DAAPLYKFLK ASKPGLFGSR IKWNFTKFLI DKNGKVINRY STATSPLSFE KDILKALED

Best Arabidopsis Sequence Match ( AT2G48150.1 )
(BLAST)

001: MGASASVPER SVHQFTVKDS SGKDLNMSIY QGKVLLIVNV ASKCGFTETN YTQLTELYRK YKDQDFEILA FPCNQFLYQE PGTSQEAHEF ACERFKAEYP
101: VFQKVRVNGQ NAAPIYKFLK ASKPTFLGSR IKWNFTKFLV GKDGLVIDRY GTMVTPLSIE KDIKKALEDA

Arabidopsis Description

GPX4Probable glutathione peroxidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L910]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.