Factsheet for Solyc09g064850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g066070.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63080.1	Solyc08g066070.1.1	AT1G07000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0104g00320.t01	Wine grape	cytosol	75.88	75.88
KRH67169	Soybean	cytosol	74.71	74.71
Zm00001d047448_P002	Maize	extracellular, mitochondrion, plasma membrane	73.53	73.53
Bra004409.1-P	Field mustard	cytosol	72.35	72.35
CDX80155	Canola	cytosol	72.35	72.35
CDX80153	Canola	cytosol	72.35	72.35
AT3G63080.1	Thale cress	cytosol	73.53	72.25
CDY27457	Canola	cytosol	60.0	71.83
CDY66093	Canola	cytosol	71.76	71.76
AT2G48150.1	Thale cress	cytosol	71.18	71.18
CDX79424	Canola	cytosol	73.53	71.02
CDY72064	Canola	cytosol	72.35	70.69
CDX67915	Canola	cytosol	72.94	70.45
GSMUA_Achr5P07930_001	Banana	cytosol	70.0	70.0
KRG95489	Soybean	cytosol	71.18	69.94
Os03t0358100-01	Rice	plasma membrane	69.41	69.82
CDX89171	Canola	cytosol	71.76	68.54
CDX93937	Canola	cytosol	71.76	67.03
KRH71458	Soybean	endoplasmic reticulum	65.88	65.88
KRH31991	Soybean	cytosol	65.29	65.29
TraesCS4A01G142000.1	Wheat	cytosol	65.29	64.53
TraesCS4B01G152800.1	Wheat	cytosol	70.59	64.17
TraesCS4D01G162000.1	Wheat	plastid	70.59	64.17
CDY15038	Canola	cytosol	69.41	63.1
Solyc06g073460.2.1	Tomato	plastid	60.59	61.68
KXG39330	Sorghum	cytosol	68.82	59.09
HORVU4Hr1G035380.1	Barley	cytosol	70.0	58.62
Bra021456.1-P	Field mustard	cytosol	69.41	57.56
Solyc12g056230.1.1	Tomato	cytosol	55.88	55.88
Solyc12g056240.1.1	Tomato	cytosol	54.71	54.71
Bra003522.1-P	Field mustard	cytosol	70.59	50.63
Solyc08g080940.2.1	Tomato	plastid	62.94	44.77
Solyc08g006720.2.1	Tomato	plastid	58.82	42.02

Protein Annotations

MapMan:10.4.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0004602
GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0055114	GO:GO:0098869	InterPro:GPX_AS	InterPro:GPX_CS	InterPro:Glutathione_peroxidase	InterPro:IPR000889
UniProt:K4CUB2	PFAM:PF00255	PIRSF:PIRSF000303	PRINTS:PR01011	ScanProsite:PS00460	ScanProsite:PS00763
PFscan:PS51355	PANTHER:PTHR11592	PANTHER:PTHR11592:SF17	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc09g064850.2	EnsemblPlants:Solyc09g064850.2.1
InterPro:Thioredoxin-like_sf	UniParc:UPI000276C329	:	:	:	:

Description

Glutathione peroxidase [Source:UniProtKB/TrEMBL;Acc:K4CUB2]

Coordinates

chr9:+:62317161..62329605

Molecular Weight (calculated)

19095.8 Da

IEP (calculated)

9.764

GRAVY (calculated)

-0.449

Length

170 amino acids

Sequence
(BLAST)

001: MGASKSVPQK SIYEFTVKDS KGKNVDLSIY KGKVLLVVNV ASKCGFTSTN YTQLTQLYNE YKDKDFEVLA FPCNQFLKQE PGTSEQAQEF ACTRFSAEYP
101: IFQKVRVNGP NEAPVYTFLK ASKGGFLSRS IKWNFTKFLV DKEGKVIRRY GSTTPPLSIK GDIEKALGEN

Best Arabidopsis Sequence Match ( AT2G48150.1 )
(BLAST)

001: MGASASVPER SVHQFTVKDS SGKDLNMSIY QGKVLLIVNV ASKCGFTETN YTQLTELYRK YKDQDFEILA FPCNQFLYQE PGTSQEAHEF ACERFKAEYP
101: VFQKVRVNGQ NAAPIYKFLK ASKPTFLGSR IKWNFTKFLV GKDGLVIDRY GTMVTPLSIE KDIKKALEDA

Arabidopsis Description

GPX4Probable glutathione peroxidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L910]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.