CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31991	Soybean	cytosol	95.88	95.88
KRH67169	Soybean	cytosol	75.29	75.29
VIT_07s0104g00320.t01	Wine grape	cytosol	73.53	73.53
KRG95489	Soybean	cytosol	73.53	72.25
CDY27457	Canola	cytosol	57.65	69.01
CDY66093	Canola	cytosol	67.65	67.65
CDX80155	Canola	cytosol	67.06	67.06
CDX80153	Canola	cytosol	67.06	67.06
Bra004409.1-P	Field mustard	cytosol	67.06	67.06
Zm00001d047448_P002	Maize	extracellular, mitochondrion, plasma membrane	67.06	67.06
CDX67915	Canola	cytosol	68.24	65.91
Solyc09g064850.2.1	Tomato	nucleus	65.88	65.88
CDX79424	Canola	cytosol	67.65	65.34
GSMUA_Achr5P07930_001	Banana	cytosol	65.29	65.29
AT2G48150.1	Thale cress	cytosol	65.29	65.29
CDY72064	Canola	cytosol	66.47	64.94
AT3G63080.1	Thale cress	cytosol	65.88	64.74
Os03t0358100-01	Rice	plasma membrane	63.53	63.91
CDX89171	Canola	cytosol	65.29	62.36
KRH27931	Soybean	cytosol, endoplasmic reticulum	60.59	61.68
KRH77533	Soybean	endoplasmic reticulum, nucleus	60.0	61.08
CDX93937	Canola	cytosol	65.29	60.99
TraesCS4A01G142000.1	Wheat	cytosol	60.59	59.88
CDY15038	Canola	cytosol	65.29	59.36
TraesCS4B01G152800.1	Wheat	cytosol	64.71	58.82
TraesCS4D01G162000.1	Wheat	plastid	64.71	58.82
KRH59862	Soybean	nucleus	56.47	57.83
KRH41733	Soybean	cytosol	55.88	57.23
KRH41161	Soybean	cytosol	54.12	55.09
KRH27930	Soybean	cytosol	54.12	55.09
HORVU4Hr1G035380.1	Barley	cytosol	64.12	53.69
Bra021456.1-P	Field mustard	cytosol	64.71	53.66
KXG39330	Sorghum	cytosol	62.35	53.54
KRH15634	Soybean	extracellular	34.71	51.75
Bra003522.1-P	Field mustard	cytosol	65.88	47.26
KRH60433	Soybean	extracellular	55.29	46.77
KRH41160	Soybean	nucleus	55.88	42.22
KRH05382	Soybean	plastid	54.71	39.74
KRH77534	Soybean	cytosol, mitochondrion	17.06	36.71

Protein Annotations

MapMan:10.4.2	EntrezGene:100527283	Gene3D:3.40.30.10	EMBL:ACUP02000899	EMBL:BT092114	UniProt:C6T3V3
EnsemblPlantsGene:GLYMA_02G149100	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0004602	GO:GO:0006950
GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0055114
GO:GO:0098869	InterPro:GPX_AS	InterPro:GPX_CS	InterPro:Glutathione_peroxidase	InterPro:IPR000889	EnsemblPlants:KRH71458
ProteinID:KRH71458	ProteinID:KRH71458.1	PFAM:PF00255	PIRSF:PIRSF000303	PRINTS:PR01011	ScanProsite:PS00460
ScanProsite:PS00763	PFscan:PS51355	PANTHER:PTHR11592	PANTHER:PTHR11592:SF17	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
UniParc:UPI0001B15629	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:15341042..15344301

Molecular Weight (calculated)

19123.0 Da

IEP (calculated)

10.156

GRAVY (calculated)

-0.398

Length

170 amino acids

Sequence
(BLAST)

001: MGASQSISEK SFHEFTVKDA RGKDVNLNAY RGKVLLVINV ASKCGFADAN YTQLTQLYST YKSRGLEILA FPCNQFLKKE PGTSQEAQDF ACTRYKAEYP
101: IFGKIRVNGS DTAPVFKFLK TQKSGVMGSR IKWNFTKFLV DEEGRVIQRY SPTTKPLAIE NDIKKALRVA

Best Arabidopsis Sequence Match ( AT2G48150.1 )
(BLAST)

001: MGASASVPER SVHQFTVKDS SGKDLNMSIY QGKVLLIVNV ASKCGFTETN YTQLTELYRK YKDQDFEILA FPCNQFLYQE PGTSQEAHEF ACERFKAEYP
101: VFQKVRVNGQ NAAPIYKFLK ASKPTFLGSR IKWNFTKFLV GKDGLVIDRY GTMVTPLSIE KDIKKALEDA

Arabidopsis Description

GPX4Probable glutathione peroxidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L910]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.