CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164
nucleus: 28499913

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27931	Soybean	cytosol, endoplasmic reticulum	98.8	98.8
KRH59862	Soybean	nucleus	86.83	87.35
VIT_02s0025g03600.t01	Wine grape	cytosol	86.23	85.21
KRH41733	Soybean	cytosol	76.05	76.51
KRH41161	Soybean	cytosol	73.65	73.65
KRH27930	Soybean	cytosol	71.86	71.86
KRH15634	Soybean	extracellular	43.71	64.04
KRH41160	Soybean	nucleus	86.23	64.0
KRH67169	Soybean	cytosol	63.47	62.35
KRG95489	Soybean	cytosol	64.07	61.85
KRH60433	Soybean	extracellular	72.46	60.2
KRH71458	Soybean	endoplasmic reticulum	61.08	60.0
KRH31991	Soybean	cytosol	60.48	59.41
Os04t0683850-00	Rice	cytosol	37.13	55.86
KRH05382	Soybean	plastid	68.26	48.72
KRH77534	Soybean	cytosol, mitochondrion	21.56	45.57

Protein Annotations

MapMan:10.4.2	EntrezGene:100306570	Gene3D:3.40.30.10	EMBL:ACUP02000679	EMBL:BT090730	UniProt:C6SZX7
EnsemblPlantsGene:GLYMA_01G219400	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0004602	GO:GO:0006950
GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0055114
GO:GO:0098869	InterPro:GPX_AS	InterPro:GPX_CS	InterPro:Glutathione_peroxidase	InterPro:IPR000889	EnsemblPlants:KRH77533
ProteinID:KRH77533	ProteinID:KRH77533.1	PFAM:PF00255	PIRSF:PIRSF000303	PRINTS:PR01011	ScanProsite:PS00460
ScanProsite:PS00763	PFscan:PS51355	PANTHER:PTHR11592	PANTHER:PTHR11592:SF51	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
UniParc:UPI0001B1522B	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:54898360..54899711

Molecular Weight (calculated)

18503.9 Da

IEP (calculated)

7.182

GRAVY (calculated)

-0.381

Length

167 amino acids

Sequence
(BLAST)

001: MASQSNTKSV HDFTVKDARG NNVNLADYKG KVLLIVNVAS QCGLTNSNYT ELNQLYEKYK GKGLEILAFP CNQFGAQEPG TNEEIVEFAC TRFKAEFPIF
101: DKVDVNGDNA APLYKFLKSS KGGLFGDSIK WNFSKFLVDK DGNVVDRYAP TTSPLSIEKD IKKLLDA

Best Arabidopsis Sequence Match ( AT4G11600.1 )
(BLAST)

001: MLRSSIRLLY IRRTSPLLRS LSSSSSSSSS KRFDSAKPLF NSHRIISLPI STTGAKLSRS EHSMAASSEP KSLYDFTVKD AKGNDVDLSI YKGKVLLIVN
101: VASQCGLTNS NYTELAQLYE KYKGHGFEIL AFPCNQFGNQ EPGTNEEIVQ FACTRFKAEY PIFDKVDVNG DKAAPVYKFL KSSKGGLFGD GIKWNFAKFL
201: VDKDGNVVDR FAPTTSPLSI EKDVKKLLGV TA

Arabidopsis Description

GPX6Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O48646]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.