CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 9
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59862	Soybean	nucleus	72.44	98.19
KRH27931	Soybean	cytosol, endoplasmic reticulum	64.0	86.23
KRH77533	Soybean	endoplasmic reticulum, nucleus	64.0	86.23
VIT_02s0025g03600.t01	Wine grape	cytosol	59.56	79.29
KRH41733	Soybean	cytosol	54.22	73.49
KRH41161	Soybean	cytosol	53.78	72.46
KRH27930	Soybean	cytosol	51.11	68.86
KRH15634	Soybean	extracellular	32.0	63.16
KRG95489	Soybean	cytosol	47.56	61.85
KRH67169	Soybean	cytosol	46.22	61.18
KRH60433	Soybean	extracellular	52.44	58.71
KRH71458	Soybean	endoplasmic reticulum	42.22	55.88
Os04t0683850-00	Rice	cytosol	27.56	55.86
KRH31991	Soybean	cytosol	41.78	55.29
KRH05382	Soybean	plastid	53.33	51.28
KRH77534	Soybean	cytosol, mitochondrion	14.67	41.77

Protein Annotations

MapMan:10.4.2	EntrezGene:100306295	Gene3D:3.40.30.10	ProteinID:ACJ61488.1	EMBL:ACUP02004752	EnsemblPlantsGene:GLYMA_08G013800
GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0004602	GO:GO:0006950	GO:GO:0006979
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	GO:GO:0098869
InterPro:GPX_AS	InterPro:GPX_CS	InterPro:Glutathione_peroxidase	UniProt:I1KP94	InterPro:IPR000889	EnsemblPlants:KRH41160
ProteinID:KRH41160	ProteinID:KRH41160.1	PFAM:PF00255	PIRSF:PIRSF000303	PRINTS:PR01011	ScanProsite:PS00460
ScanProsite:PS00763	PFscan:PS51355	PANTHER:PTHR11592	PANTHER:PTHR11592:SF51	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
UniParc:UPI0002337E31	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:1074146..1076750

Molecular Weight (calculated)

25139.0 Da

IEP (calculated)

9.504

GRAVY (calculated)

-0.278

Length

225 amino acids

Sequence
(BLAST)

001: MLSISATRIF FLRSTTIRLS SSSSSLQFFS NPNRTLFRPF LHTSFKPLPS SFSFRTDHTM ATSNAKSVHD FTVKDAKGND INLGDYKGKV LIIVNVASQC
101: GLTNSNYTEL SQLYEKYKQK GLEILAFPCN QFGAQEPGSN EQIQEFVCTR FKAEFPVFDK VDVNGDKAAP LYKYLKSSKG GLLGDGIKWN FAKFLVDKEG
201: NVVDRYAPTT SPLSIEKDLL KLLDA

Best Arabidopsis Sequence Match ( AT4G11600.1 )
(BLAST)

001: MLRSSIRLLY IRRTSPLLRS LSSSSSSSSS KRFDSAKPLF NSHRIISLPI STTGAKLSRS EHSMAASSEP KSLYDFTVKD AKGNDVDLSI YKGKVLLIVN
101: VASQCGLTNS NYTELAQLYE KYKGHGFEIL AFPCNQFGNQ EPGTNEEIVQ FACTRFKAEY PIFDKVDVNG DKAAPVYKFL KSSKGGLFGD GIKWNFAKFL
201: VDKDGNVVDR FAPTTSPLSI EKDVKKLLGV TA

Arabidopsis Description

GPX6Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O48646]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.