CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27931	Soybean	cytosol, endoplasmic reticulum	87.35	86.83
KRH77533	Soybean	endoplasmic reticulum, nucleus	87.35	86.83
VIT_02s0025g03600.t01	Wine grape	cytosol	82.53	81.07
KRH41733	Soybean	cytosol	74.7	74.7
KRH41161	Soybean	cytosol	72.89	72.46
KRH41160	Soybean	nucleus	98.19	72.44
KRH27930	Soybean	cytosol	70.48	70.06
KRH15634	Soybean	extracellular	42.77	62.28
KRG95489	Soybean	cytosol	64.46	61.85
KRH67169	Soybean	cytosol	62.65	61.18
KRH60433	Soybean	extracellular	71.69	59.2
Os04t0683850-00	Rice	cytosol	37.95	56.76
KRH71458	Soybean	endoplasmic reticulum	57.83	56.47
KRH31991	Soybean	cytosol	57.23	55.88
KRH05382	Soybean	plastid	67.47	47.86
KRH77534	Soybean	cytosol, mitochondrion	20.48	43.04

Protein Annotations

MapMan:10.4.2	Gene3D:3.40.30.10	EMBL:ACUP02003342	EnsemblPlantsGene:GLYMA_05G207100	GO:GO:0003674	GO:GO:0003824
GO:GO:0004601	GO:GO:0004602	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	GO:GO:0098869	InterPro:GPX_AS	InterPro:GPX_CS
InterPro:Glutathione_peroxidase	UniProt:I1K6J6	InterPro:IPR000889	EnsemblPlants:KRH59862	ProteinID:KRH59862	ProteinID:KRH59862.1
PFAM:PF00255	PIRSF:PIRSF000303	PRINTS:PR01011	ScanProsite:PS00460	ScanProsite:PS00763	PFscan:PS51355
PANTHER:PTHR11592	PANTHER:PTHR11592:SF51	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0001B34003	:

Description

hypothetical protein

Coordinates

chr5:+:38943141..38945550

Molecular Weight (calculated)

18376.8 Da

IEP (calculated)

7.180

GRAVY (calculated)

-0.354

Length

166 amino acids

Sequence
(BLAST)

001: MATSSAKSVH DFTVKDAKGN DINLGDYKGK VLIIVNVASQ CGLTNSNYTE LSQLYEKYKQ KGLEILAFPC NQFGAQEPGS NEQIQEFVCT RFKAEFPVFD
101: KVDVNGDKAA PLYKYLKSSK GGLFGDGIKW NFSKFLVDKE GNVVDRYAPT TSPLSIEKDL LKLLDA

Best Arabidopsis Sequence Match ( AT4G11600.1 )
(BLAST)

001: MLRSSIRLLY IRRTSPLLRS LSSSSSSSSS KRFDSAKPLF NSHRIISLPI STTGAKLSRS EHSMAASSEP KSLYDFTVKD AKGNDVDLSI YKGKVLLIVN
101: VASQCGLTNS NYTELAQLYE KYKGHGFEIL AFPCNQFGNQ EPGTNEEIVQ FACTRFKAEY PIFDKVDVNG DKAAPVYKFL KSSKGGLFGD GIKWNFAKFL
201: VDKDGNVVDR FAPTTSPLSI EKDVKKLLGV TA

Arabidopsis Description

GPX6Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O48646]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.