Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G63080.1 | CDY06667 | AT1G07000.1 | 21798944 |
| AT3G63080.1 | CDY10240 | AT1G07000.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93937 | Canola | cytosol | 97.75 | 95.6 |
| CDX67915 | Canola | cytosol | 84.83 | 85.8 |
| CDX79424 | Canola | cytosol | 83.71 | 84.66 |
| AT3G63080.1 | Thale cress | cytosol | 82.02 | 84.39 |
| CDY66093 | Canola | cytosol | 78.65 | 82.35 |
| CDY27457 | Canola | cytosol | 65.17 | 81.69 |
| CDX80153 | Canola | cytosol | 77.53 | 81.18 |
| CDX80155 | Canola | cytosol | 77.53 | 81.18 |
| CDY72064 | Canola | cytosol | 78.65 | 80.46 |
| Zm00001d047448_P002 | Maize | extracellular, mitochondrion, plasma membrane | 70.22 | 73.53 |
| Solyc09g064850.2.1 | Tomato | nucleus | 68.54 | 71.76 |
| KRH67169 | Soybean | cytosol | 68.54 | 71.76 |
| VIT_07s0104g00320.t01 | Wine grape | cytosol | 67.98 | 71.18 |
| CDY15038 | Canola | cytosol | 74.72 | 71.12 |
| Os03t0358100-01 | Rice | plasma membrane | 66.29 | 69.82 |
| GSMUA_Achr5P07930_001 | Banana | cytosol | 64.04 | 67.06 |
| KRG95489 | Soybean | cytosol | 65.17 | 67.05 |
| TraesCS4A01G142000.1 | Wheat | cytosol | 63.48 | 65.7 |
| CDX86767 | Canola | cytosol | 62.92 | 65.5 |
| KRH71458 | Soybean | endoplasmic reticulum | 62.36 | 65.29 |
| CDY70265 | Canola | cytosol | 61.8 | 64.33 |
| TraesCS4D01G162000.1 | Wheat | plastid | 67.42 | 64.17 |
| TraesCS4B01G152800.1 | Wheat | cytosol | 67.42 | 64.17 |
| KRH31991 | Soybean | cytosol | 61.24 | 64.12 |
| KXG39330 | Sorghum | cytosol | 65.17 | 58.59 |
| HORVU4Hr1G035380.1 | Barley | cytosol | 66.29 | 58.13 |
| CDX84772 | Canola | cytosol | 52.81 | 55.62 |
| CDY10812 | Canola | cytosol | 52.81 | 55.62 |
| CDY54730 | Canola | cytosol | 52.81 | 55.62 |
| CDY23931 | Canola | cytosol | 52.81 | 55.62 |
| CDY25499 | Canola | cytosol | 50.0 | 53.61 |
| CDY60808 | Canola | cytosol | 42.13 | 53.57 |
| CDY34354 | Canola | cytosol | 49.44 | 52.69 |
| CDY25288 | Canola | mitochondrion, plastid | 61.24 | 47.6 |
| CDY37628 | Canola | mitochondrion, plastid | 61.24 | 47.6 |
| CDX83486 | Canola | endoplasmic reticulum | 51.69 | 46.7 |
| CDY44221 | Canola | endoplasmic reticulum | 51.69 | 46.7 |
| CDX72332 | Canola | plastid | 55.62 | 42.67 |
| CDY01168 | Canola | plastid | 55.62 | 42.67 |
| CDY13458 | Canola | plastid | 55.62 | 42.67 |
| CDY69660 | Canola | plastid | 53.93 | 41.2 |
| CDX76773 | Canola | plastid | 51.12 | 37.76 |
| CDY07183 | Canola | plastid | 21.35 | 30.4 |
Protein Annotations
| MapMan:10.4.2 | Gene3D:3.40.30.10 | GO:A0A078DIX2 | EnsemblPlants:CDX89171 | ProteinID:CDX89171 | ProteinID:CDX89171.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004602 | GO:GO:0006950 | GO:GO:0006979 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0055114 | InterPro:GPX_AS | InterPro:GPX_CS | EnsemblPlantsGene:GSBRNA2T00149327001 | InterPro:Glutathione_peroxidase |
| InterPro:IPR000889 | PFAM:PF00255 | PIRSF:PIRSF000303 | PRINTS:PR01011 | ScanProsite:PS00460 | ScanProsite:PS00763 |
| PFscan:PS51355 | PANTHER:PTHR11592 | PANTHER:PTHR11592:SF17 | SUPFAM:SSF52833 | InterPro:Thioredoxin-like_sf | UniParc:UPI0004EF4392 |
Description
BnaA04g00150D
Coordinates
chrLK031857:+:1562279..1563566
Molecular Weight (calculated)
19898.8 Da
IEP (calculated)
8.831
GRAVY (calculated)
-0.233
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGSLSAVSE KSIHEFTVKD STGKEVDLSI YQGKVLLVVN VASKCGFTES NYTQLTELYQ RYKDQGFVIL AFPCNQFMYQ EPGTSQDAHA FACTRFKAEY
101: PVFQKVCVNG QNAAPVYKFL KSKKPTFFGT RIKWNFTKFL VGKDGQVIDR YGLTVPPLSI EKDIIKALGE AGDDVSKY
101: PVFQKVCVNG QNAAPVYKFL KSKKPTFFGT RIKWNFTKFL VGKDGQVIDR YGLTVPPLSI EKDIIKALGE AGDDVSKY
001: MGASSSSSVS EKSIHQFTVK DSSGKEVDLS VYQGKVLLVV NVASKCGFTE SNYTQLTELY RKYKDQGFVV LAFPCNQFLS QEPGTSEEAH QFACTRFKAE
101: YPVFQKVRVN GQNAAPVYKF LKSKKPSFLG SRIKWNFTKF LVGKDGQVID RYGTTVSPLS IQKDIEKALA QEL
101: YPVFQKVRVN GQNAAPVYKF LKSKKPSFLG SRIKWNFTKF LVGKDGQVID RYGTTVSPLS IQKDIEKALA QEL
Arabidopsis Description
GPX5Probable glutathione peroxidase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYB4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.