Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G63080.1 | CDY06667 | AT1G07000.1 | 21798944 |
| AT3G63080.1 | CDY10240 | AT1G07000.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67915 | Canola | cytosol | 97.73 | 97.73 |
| AT3G63080.1 | Thale cress | cytosol | 85.8 | 87.28 |
| CDY66093 | Canola | cytosol | 81.25 | 84.12 |
| CDX89171 | Canola | cytosol | 84.66 | 83.71 |
| CDX93937 | Canola | cytosol | 86.36 | 83.52 |
| CDX80153 | Canola | cytosol | 80.11 | 82.94 |
| CDX80155 | Canola | cytosol | 80.11 | 82.94 |
| CDY27457 | Canola | cytosol | 66.48 | 82.39 |
| CDY72064 | Canola | cytosol | 80.11 | 81.03 |
| VIT_07s0104g00320.t01 | Wine grape | cytosol | 72.16 | 74.71 |
| Zm00001d047448_P002 | Maize | extracellular, mitochondrion, plasma membrane | 71.59 | 74.12 |
| KRH67169 | Soybean | cytosol | 71.59 | 74.12 |
| Solyc09g064850.2.1 | Tomato | nucleus | 71.02 | 73.53 |
| CDY15038 | Canola | cytosol | 77.84 | 73.26 |
| Os03t0358100-01 | Rice | plasma membrane | 68.75 | 71.6 |
| KRG95489 | Soybean | cytosol | 69.89 | 71.1 |
| Bra003522.1-P | Field mustard | cytosol | 91.48 | 67.93 |
| KRH71458 | Soybean | endoplasmic reticulum | 65.34 | 67.65 |
| GSMUA_Achr5P07930_001 | Banana | cytosol | 65.34 | 67.65 |
| TraesCS4A01G142000.1 | Wheat | cytosol | 65.91 | 67.44 |
| KRH31991 | Soybean | cytosol | 64.77 | 67.06 |
| CDX86767 | Canola | cytosol | 64.77 | 66.67 |
| TraesCS4D01G162000.1 | Wheat | plastid | 70.45 | 66.31 |
| TraesCS4B01G152800.1 | Wheat | cytosol | 70.45 | 66.31 |
| CDY70265 | Canola | cytosol | 64.2 | 66.08 |
| KXG39330 | Sorghum | cytosol | 68.18 | 60.61 |
| HORVU4Hr1G035380.1 | Barley | cytosol | 69.89 | 60.59 |
| CDY10812 | Canola | cytosol | 56.82 | 59.17 |
| CDY54730 | Canola | cytosol | 56.82 | 59.17 |
| CDX84772 | Canola | cytosol | 56.25 | 58.58 |
| CDY23931 | Canola | cytosol | 56.25 | 58.58 |
| CDY25499 | Canola | cytosol | 52.84 | 56.02 |
| CDY34354 | Canola | cytosol | 52.27 | 55.09 |
| CDY60808 | Canola | cytosol | 43.18 | 54.29 |
| CDY44221 | Canola | endoplasmic reticulum | 55.68 | 49.75 |
| CDX83486 | Canola | endoplasmic reticulum | 55.11 | 49.24 |
| CDY25288 | Canola | mitochondrion, plastid | 62.5 | 48.03 |
| CDY37628 | Canola | mitochondrion, plastid | 62.5 | 48.03 |
| CDY01168 | Canola | plastid | 57.39 | 43.53 |
| CDY13458 | Canola | plastid | 57.39 | 43.53 |
| CDX72332 | Canola | plastid | 57.39 | 43.53 |
| CDY69660 | Canola | plastid | 55.68 | 42.06 |
| CDX76773 | Canola | plastid | 52.27 | 38.17 |
| CDY07183 | Canola | plastid | 21.59 | 30.4 |
Protein Annotations
| MapMan:10.4.2 | Gene3D:3.40.30.10 | GO:A0A078CTQ1 | EnsemblPlants:CDX79424 | ProteinID:CDX79424 | ProteinID:CDX79424.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004602 | GO:GO:0006950 | GO:GO:0006979 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0055114 | InterPro:GPX_AS | InterPro:GPX_CS | EnsemblPlantsGene:GSBRNA2T00132153001 | InterPro:Glutathione_peroxidase |
| InterPro:IPR000889 | PFAM:PF00255 | PIRSF:PIRSF000303 | PRINTS:PR01011 | ScanProsite:PS00460 | ScanProsite:PS00763 |
| PFscan:PS51355 | PANTHER:PTHR11592 | PANTHER:PTHR11592:SF17 | SUPFAM:SSF52833 | InterPro:Thioredoxin-like_sf | UniParc:UPI0001B34001 |
Description
BnaC06g18790D
Coordinates
chrLK031817:-:2134258..2135756
Molecular Weight (calculated)
19623.5 Da
IEP (calculated)
9.678
GRAVY (calculated)
-0.360
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGSISVPEK SIHEFTVKDS SGKEVDLSVY QGKVLLIVNV ASKCGFTQTN YTQLTELYRK YKDQGLVILA FPCNQFLNQE PGTSQDAHEF ACTRFKAEYP
101: VFQKVRVNGQ NAAPVYKFLK SKKPSFLGSR IKWNFTKFLV GKDGQVIDRY GPTVPPLSIE KDIKKALGDE GAFPST
101: VFQKVRVNGQ NAAPVYKFLK SKKPSFLGSR IKWNFTKFLV GKDGQVIDRY GPTVPPLSIE KDIKKALGDE GAFPST
001: MGASSSSSVS EKSIHQFTVK DSSGKEVDLS VYQGKVLLVV NVASKCGFTE SNYTQLTELY RKYKDQGFVV LAFPCNQFLS QEPGTSEEAH QFACTRFKAE
101: YPVFQKVRVN GQNAAPVYKF LKSKKPSFLG SRIKWNFTKF LVGKDGQVID RYGTTVSPLS IQKDIEKALA QEL
101: YPVFQKVRVN GQNAAPVYKF LKSKKPSFLG SRIKWNFTKF LVGKDGQVID RYGTTVSPLS IQKDIEKALA QEL
Arabidopsis Description
GPX5Probable glutathione peroxidase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYB4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.