CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31570.1	CDY03088	AT2G01950.1	19000166
AT2G31570.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018232.1-P	Field mustard	cytosol	100.0	100.0
CDY10812	Canola	cytosol	100.0	100.0
AT2G31570.1	Thale cress	cytosol	95.86	95.86
CDY23931	Canola	cytosol	95.27	95.27
CDX84772	Canola	cytosol	95.27	95.27
Solyc06g073460.2.1	Tomato	plastid	76.33	77.25
Os11t0284900-01	Rice	cytosol	59.76	70.14
CDX86767	Canola	cytosol	65.68	64.91
CDY70265	Canola	cytosol	65.68	64.91
OQU83353	Sorghum	endoplasmic reticulum	75.74	62.44
CDX80155	Canola	cytosol	59.17	58.82
CDX80153	Canola	cytosol	59.17	58.82
CDY66093	Canola	cytosol	58.58	58.24
CDY25499	Canola	cytosol	56.8	57.83
CDY27457	Canola	cytosol	48.52	57.75
CDY72064	Canola	cytosol	59.17	57.47
CDX83486	Canola	endoplasmic reticulum	66.86	57.36
CDY34354	Canola	cytosol	56.21	56.89
CDX67915	Canola	cytosol	59.17	56.82
CDX79424	Canola	cytosol	59.17	56.82
CDY44221	Canola	endoplasmic reticulum	65.09	55.84
CDY60808	Canola	cytosol	45.56	55.0
CDX89171	Canola	cytosol	55.62	52.81
CDX93937	Canola	cytosol	56.21	52.2
CDY15038	Canola	cytosol	56.21	50.8
CDY25288	Canola	mitochondrion, plastid	68.05	50.22
CDY37628	Canola	mitochondrion, plastid	68.05	50.22
CDY13458	Canola	plastid	66.86	48.71
CDY01168	Canola	plastid	66.86	48.71
CDX72332	Canola	plastid	66.27	48.28
CDY69660	Canola	plastid	65.68	47.64
CDX76773	Canola	plastid	63.31	44.4
CDY07183	Canola	plastid	21.3	28.8

Protein Annotations

MapMan:10.4.2	Gene3D:3.40.30.10	GO:A0A078IXA9	UniProt:A0A078IXA9	ProteinID:CDY10812.1	EnsemblPlants:CDY54730
ProteinID:CDY54730	ProteinID:CDY54730.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0004602
GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0055114	GO:GO:0098869	InterPro:GPX_AS	InterPro:GPX_CS	EnsemblPlantsGene:GSBRNA2T00014598001	InterPro:Glutathione_peroxidase
InterPro:IPR000889	PFAM:PF00255	PIRSF:PIRSF000303	PRINTS:PR01011	ScanProsite:PS00460	ScanProsite:PS00763
PFscan:PS51355	PANTHER:PTHR11592	PANTHER:PTHR11592:SF51	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0001B33FFD

Description

BnaCnng27540DGlutathione peroxidase [Source:UniProtKB/TrEMBL;Acc:A0A078IXA9]

Coordinates

chrLK033346:+:38531..40160

Molecular Weight (calculated)

18931.6 Da

IEP (calculated)

6.621

GRAVY (calculated)

-0.397

Length

169 amino acids

Sequence
(BLAST)

001: MADESPKSIY DFTVKDISGN DVSLSQFKGK TLLIVNVASK CGLTDANYKE LNVLYEKYKE QGLEILAFPC NQFLGQEPGN NEEIQQTVCT RFKAEFPIFD
101: KVDVNGKNTA PLYKYLKAEK GGLLIDAIKW NFTKFLVSPD GKVSQRYSPR TSPLQFEKDI QALLGQASS

Best Arabidopsis Sequence Match ( AT2G31570.1 )
(BLAST)

001: MADESPKSIY DFTVKDIGGN DVSLDQYKGK TLLVVNVASK CGLTDANYKE LNVLYEKYKE QGLEILAFPC NQFLGQEPGN NEEIQQTVCT RFKAEFPIFD
101: KVDVNGKNTA PLYKYLKAEK GGLLIDAIKW NFTKFLVSPD GKVLQRYSPR TSPLQFEKDI QTALGQASS

Arabidopsis Description

GPX2Probable glutathione peroxidase 2 [Source:UniProtKB/Swiss-Prot;Acc:O04922]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.