Factsheet for Solyc06g073460.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 26371478
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31570.1	Solyc04g008430.1.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0102g00120.t01	Wine grape	cytosol	76.65	76.65
Bra018232.1-P	Field mustard	cytosol	77.25	76.33
CDY54730	Canola	cytosol	77.25	76.33
CDY10812	Canola	cytosol	77.25	76.33
CDX84772	Canola	cytosol	76.05	75.15
CDY23931	Canola	cytosol	76.05	75.15
Bra022853.1-P	Field mustard	cytosol	76.05	75.15
AT2G31570.1	Thale cress	cytosol	76.05	75.15
KRH41733	Soybean	cytosol	74.25	74.7
Os11t0284900-01	Rice	cytosol	59.88	69.44
Solyc12g056230.1.1	Tomato	cytosol	68.26	67.06
Solyc12g056240.1.1	Tomato	cytosol	65.87	64.71
OQU83353	Sorghum	endoplasmic reticulum	74.85	60.98
KRH60433	Soybean	extracellular	73.05	60.7
Solyc09g064850.2.1	Tomato	nucleus	61.68	60.59
Solyc08g080940.2.1	Tomato	plastid	70.66	49.37
Solyc08g006720.2.1	Tomato	plastid	70.06	49.16

Protein Annotations

MapMan:10.4.2	Gene3D:3.40.30.10	EMBL:AY301280	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601
GO:GO:0004602	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0005886	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0055114	GO:GO:0098869	InterPro:GPX_AS
InterPro:GPX_CS	InterPro:Glutathione_peroxidase	InterPro:IPR000889	PFAM:PF00255	PIRSF:PIRSF000303	PRINTS:PR01011
ScanProsite:PS00460	ScanProsite:PS00763	PFscan:PS51355	PANTHER:PTHR11592	PANTHER:PTHR11592:SF42	UniProt:Q7XZS6
SUPFAM:SSF52833	EnsemblPlantsGene:Solyc06g073460.2	EnsemblPlants:Solyc06g073460.2.1	InterPro:Thioredoxin-like_sf	UniParc:UPI00001A9FD7	:

Description

Probable glutathione peroxidase 2 [Source:Projected from Arabidopsis thaliana (AT2G31570) UniProtKB/Swiss-Prot;Acc:O04922]

Coordinates

chr6:-:45274138..45278189

Molecular Weight (calculated)

18931.7 Da

IEP (calculated)

6.641

GRAVY (calculated)

-0.368

Length

167 amino acids

Sequence
(BLAST)

001: MAEGSPKSIY DFTVKDIQGN EVPLSNYRGK VLLIVNVASK CGLTDSNYKE LNILYEKYKD QGFEILAFPC NQFLWQEPGT NEEIQQTVCT RFKAEFPVFE
101: KIDVNGDNAA PLYKFLKSEK GGFLGSAVKW NFTKFLVDKE GKVVERYAPK TPPLQFEKDI KNLLGVA

Best Arabidopsis Sequence Match ( AT2G31570.1 )
(BLAST)

001: MADESPKSIY DFTVKDIGGN DVSLDQYKGK TLLVVNVASK CGLTDANYKE LNVLYEKYKE QGLEILAFPC NQFLGQEPGN NEEIQQTVCT RFKAEFPIFD
101: KVDVNGKNTA PLYKYLKAEK GGLLIDAIKW NFTKFLVSPD GKVLQRYSPR TSPLQFEKDI QTALGQASS

Arabidopsis Description

GPX2Probable glutathione peroxidase 2 [Source:UniProtKB/Swiss-Prot;Acc:O04922]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.