Factsheet for Solyc08g006720.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067601	Potato	plastid	94.54	94.54
KRH15634	Soybean	extracellular	38.66	80.7
KRH05382	Soybean	plastid	70.59	71.79
Solyc06g073460.2.1	Tomato	plastid	49.16	70.06
VIT_04s0008g06780.t01	Wine grape	plastid	71.43	69.11
AT4G31870.1	Thale cress	plastid	67.23	68.67
Bra007819.1-P	Field mustard	plastid	67.23	68.67
CDY69660	Canola	plastid	66.81	68.24
Zm00001d037079_P001	Maize	plastid	65.55	67.83
AT2G25080.1	Thale cress	plastid	66.39	66.95
TraesCS7B01G054400.1	Wheat	plastid	63.45	66.52
Solyc12g056230.1.1	Tomato	cytosol	47.48	66.47
EER87981	Sorghum	plastid	64.71	66.38
TraesCS7D01G152400.1	Wheat	plastid	63.45	65.94
Bra023978.1-P	Field mustard	plastid	63.87	65.52
CDY01168	Canola	plastid	63.87	65.52
CDX72332	Canola	plastid	63.87	65.52
CDY13458	Canola	plastid	63.87	65.52
TraesCS7A01G150500.1	Wheat	plastid	63.03	65.5
Os06t0185900-01	Rice	plastid	63.87	64.96
Solyc12g056240.1.1	Tomato	cytosol	45.38	63.53
CDX76773	Canola	plastid	64.29	63.49
GSMUA_Achr7P16200_001	Banana	plastid	63.03	62.5
Solyc09g064850.2.1	Tomato	nucleus	42.02	58.82
GSMUA_Achr5P24260_001	Banana	plasma membrane	68.07	54.55
HORVU7Hr1G030810.1	Barley	plastid	59.24	53.61
Solyc08g080940.2.1	Tomato	plastid	49.58	49.37

Protein Annotations

MapMan:10.4.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0004602
GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0055114	GO:GO:0098869	InterPro:GPX_AS	InterPro:GPX_CS	InterPro:Glutathione_peroxidase	InterPro:IPR000889
UniProt:K4CIG0	PFAM:PF00255	PIRSF:PIRSF000303	PRINTS:PR01011	ScanProsite:PS00460	ScanProsite:PS00763
PFscan:PS51355	PANTHER:PTHR11592	PANTHER:PTHR11592:SF42	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc08g006720.2	EnsemblPlants:Solyc08g006720.2.1
InterPro:Thioredoxin-like_sf	UniParc:UPI000276C233	SEG:seg	:	:	:

Description

Glutathione peroxidase [Source:UniProtKB/TrEMBL;Acc:K4CIG0]

Coordinates

chr8:-:1274923..1279455

Molecular Weight (calculated)

26205.1 Da

IEP (calculated)

9.458

GRAVY (calculated)

-0.239

Length

238 amino acids

Sequence
(BLAST)

001: MASFASSSTF SPICTFFSKP KLNLYCNSSS SSSYKPTCNS SKSSFFQNGF SLLTAKSFGS SLKSKNMANT IYARAATEKT IYDFTVKDID GKDVPLSTFK
101: GKVLLIVNVA SRCGLTTSNY TELSSVYEKY KNQGLEILAF PCNQFGAQEP GSNPEIKQFA CTRFKAEFPI FDKVDVNGPN TAPVYQFLKS SAGGFLGDLV
201: KWNFEKFLVD KNGKVVERYP PTTSPLQIEK DIQKLLAA

Best Arabidopsis Sequence Match ( AT4G31870.1 )
(BLAST)

001: MAFSYASFST PFNGFAANPS PITSAFLGPS LRFSTRTSKT RNPSNGVSVK SSNSHRFLVK SKNFSVYARA AAEKSVHDFT VKDIDGNDVS LDKFKGKPLL
101: IVNVASRCGL TSSNYSELSQ LYEKYKNQGF EILAFPCNQF GGQEPGSNPE IKQFACTRFK AEFPIFDKVD VNGPSTAPIY KFLKSNAGGF LGDIIKWNFE
201: KFLVDKKGKV VERYPPTTSP FQIEKDIQKL LAA

Arabidopsis Description

GPX7Putative glutathione peroxidase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ54]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.