Factsheet for VIT_04s0008g06780.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15634	Soybean	extracellular	37.4	80.7
CDY69660	Canola	plastid	69.51	73.39
Bra007819.1-P	Field mustard	plastid	69.11	72.96
AT2G25080.1	Thale cress	plastid	69.92	72.88
KRH05382	Soybean	plastid	68.7	72.22
Solyc08g006720.2.1	Tomato	plastid	69.11	71.43
PGSC0003DMT400067601	Potato	plastid	68.7	71.01
AT4G31870.1	Thale cress	plastid	67.07	70.82
VIT_05s0102g00120.t01	Wine grape	cytosol	47.97	70.66
TraesCS7B01G054400.1	Wheat	plastid	64.63	70.04
TraesCS7A01G150500.1	Wheat	plastid	65.04	69.87
Zm00001d037079_P001	Maize	plastid	65.04	69.57
EER87981	Sorghum	plastid	65.04	68.97
CDY01168	Canola	plastid	64.63	68.53
CDX72332	Canola	plastid	64.63	68.53
Bra023978.1-P	Field mustard	plastid	64.63	68.53
CDY13458	Canola	plastid	64.63	68.53
CDX76773	Canola	plastid	67.07	68.46
TraesCS7D01G152400.1	Wheat	plastid	63.41	68.12
Os06t0185900-01	Rice	plastid	63.82	67.09
VIT_02s0025g03600.t01	Wine grape	cytosol	45.94	66.86
VIT_02s0025g03590.t01	Wine grape	cytosol	44.31	64.12
GSMUA_Achr7P16200_001	Banana	plastid	60.98	62.5
VIT_07s0104g00320.t01	Wine grape	cytosol	42.68	61.76
HORVU7Hr1G030810.1	Barley	plastid	60.57	56.65
GSMUA_Achr5P24260_001	Banana	plasma membrane	68.29	56.57

Protein Annotations

MapMan:10.4.2	EntrezGene:100245697	wikigene:100245697	Gene3D:3.40.30.10	EMBL:AM469124	ProteinID:CAN70486
ProteinID:CAN70486.1	ProteinID:CCB46873	ProteinID:CCB46873.1	UniProt:F6H344	EMBL:FN595231	GO:GO:0003674
GO:GO:0003824	GO:GO:0004601	GO:GO:0004602	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	GO:GO:0098869	InterPro:GPX_AS
InterPro:GPX_CS	InterPro:Glutathione_peroxidase	InterPro:IPR000889	EntrezGene:LOC100245697	wikigene:LOC100245697	PFAM:PF00255
PIRSF:PIRSF000303	PRINTS:PR01011	ScanProsite:PS00460	ScanProsite:PS00763	PFscan:PS51355	PANTHER:PTHR11592
PANTHER:PTHR11592:SF42	SUPFAM:SSF52833	TIGR:TC52412	InterPro:Thioredoxin-like_sf	UniParc:UPI00015C8CAA	ArrayExpress:VIT_04s0008g06780
EnsemblPlantsGene:VIT_04s0008g06780	EnsemblPlants:VIT_04s0008g06780.t01	unigene:Vvi.6969	RefSeq:XP_002285564	RefSeq:XP_002285564.1	SEG:seg

Description

Glutathione peroxidase [Source:UniProtKB/TrEMBL;Acc:F6H344]

Coordinates

chr4:+:6786263..6792784

Molecular Weight (calculated)

27122.3 Da

IEP (calculated)

9.588

GRAVY (calculated)

-0.237

Length

246 amino acids

Sequence
(BLAST)

001: MASMPFSVSF TAHSPGFAQT KAAHHHSWPS SPYPSMAFLM PSTKSSFGAS NSAFLRTGFS LCSSEIPGVS LKSRFSGGVY ARAATEKSLY DYTVKDIEKK
101: DVPLSKFKGK VLLIVNVASK CGLTASNYSE LSHIYEKYKT QGFEILAFPC NQFGGQEPGS NPEIKQFACT RFKAEFPIFD KVDVNGPTTA PVYQFLKSNA
201: GGFLGDLIKW NFEKFLVDKN GKVVERYQPT TSPFQIEKDI QRLLAA

Best Arabidopsis Sequence Match ( AT2G25080.1 )
(BLAST)

001: MVSMTTSSSS YGTFSTVVNS SRPNSSATFL VPSLKFSTGI SNFANLSNGF SLKSPINPGF LFKSRPFTVQ ARAAAEKTVH DFTVKDIDGK DVALNKFKGK
101: VMLIVNVASR CGLTSSNYSE LSHLYEKYKT QGFEILAFPC NQFGFQEPGS NSEIKQFACT RFKAEFPIFD KVDVNGPSTA PIYEFLKSNA GGFLGGLIKW
201: NFEKFLIDKK GKVVERYPPT TSPFQIEKDI QKLLAA

Arabidopsis Description

GPX1Phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P52032]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.