Factsheet for GSMUA_Achr5P24260_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15634	Soybean	extracellular	30.64	79.82
GSMUA_Achr11P...	Banana	unclear	41.41	73.21
Zm00001d037079_P001	Maize	plastid	55.89	72.17
EER87981	Sorghum	plastid	55.89	71.55
TraesCS7B01G054400.1	Wheat	plastid	53.87	70.48
GSMUA_Achr4P26240_001	Banana	cytosol	39.73	70.24
Os06t0185900-01	Rice	plastid	55.22	70.09
TraesCS7A01G150500.1	Wheat	plastid	53.87	69.87
TraesCS7D01G152400.1	Wheat	plastid	53.54	69.43
GSMUA_AchrUn_...	Banana	cytosol	39.06	69.05
Bra007819.1-P	Field mustard	plastid	53.87	68.67
CDY69660	Canola	plastid	53.87	68.67
PGSC0003DMT400067601	Potato	plastid	54.88	68.49
VIT_04s0008g06780.t01	Wine grape	plastid	56.57	68.29
Solyc08g006720.2.1	Tomato	plastid	54.55	68.07
AT2G25080.1	Thale cress	plastid	53.87	67.8
KRH05382	Soybean	plastid	53.2	67.52
AT4G31870.1	Thale cress	plastid	52.53	66.95
CDY13458	Canola	plastid	51.18	65.52
CDY01168	Canola	plastid	51.18	65.52
CDX72332	Canola	plastid	51.18	65.52
Bra023978.1-P	Field mustard	plastid	51.18	65.52
GSMUA_Achr7P16200_001	Banana	plastid	52.86	65.42
CDX76773	Canola	plastid	51.85	63.9
GSMUA_Achr9P07960_001	Banana	cytosol	24.58	62.39
GSMUA_Achr5P07930_001	Banana	cytosol	35.69	62.35
HORVU7Hr1G030810.1	Barley	plastid	50.17	56.65
GSMUA_Achr8P11390_001	Banana	cytosol	27.95	47.7

Protein Annotations

MapMan:10.4.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0004602
GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0055114	GO:GO:0098869	InterPro:GPX_AS	InterPro:GPX_CS	EnsemblPlantsGene:GSMUA_Achr5G24260_001	EnsemblPlants:GSMUA_Achr5P24260_001
EnsemblPlants:GSMUA_Achr5T24260_001	InterPro:Glutathione_peroxidase	InterPro:IPR000889	UniProt:M0T1A1	PFAM:PF00255	PRINTS:PR01011
ScanProsite:PS00460	ScanProsite:PS00763	PFscan:PS51355	PANTHER:PTHR11592	PANTHER:PTHR11592:SF42	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	UniParc:UPI0002957FF7	:	:	:	:

Description

Phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr5G24260_001]

Coordinates

chr5:-:25691650..25699602

Molecular Weight (calculated)

33051.4 Da

IEP (calculated)

9.423

GRAVY (calculated)

-0.262

Length

297 amino acids

Sequence
(BLAST)

001: MPGYEQVISI RSGHTAECSR TRRRGSARFH EHPFPFFDGF CYLGIETLPP PNSIPEFALD FDSMASAATA FFVPLYASPS PHGASRSFFH RSAYFSFGLP
101: RSAFRALKHS FPLHKEPGFV PKPVRAPGVA YATAATEKSI HDFTVKDIDG KDVSLSKFKG KVLLIVNVAS KCGLTTSNYT ELSHIYEKYK TQGFEILAFP
201: CNQFGGQEPG SNSEIKQFAC TRFKTDFPIF DKVDVNGPKT APVYQFLKSS AGGFLGDLIK WNFEKFLVDK NGKVVERYPP TTSPFQIEKD IQKLLAA

Best Arabidopsis Sequence Match ( AT2G25080.1 )
(BLAST)

001: MVSMTTSSSS YGTFSTVVNS SRPNSSATFL VPSLKFSTGI SNFANLSNGF SLKSPINPGF LFKSRPFTVQ ARAAAEKTVH DFTVKDIDGK DVALNKFKGK
101: VMLIVNVASR CGLTSSNYSE LSHLYEKYKT QGFEILAFPC NQFGFQEPGS NSEIKQFACT RFKAEFPIFD KVDVNGPSTA PIYEFLKSNA GGFLGGLIKW
201: NFEKFLIDKK GKVVERYPPT TSPFQIEKDI QKLLAA

Arabidopsis Description

GPX1Phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P52032]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.