Factsheet for GSMUA_Achr11P04010_001

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

cytosol 3
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P26240_001	Banana	cytosol	88.1	88.1
GSMUA_AchrUn_...	Banana	cytosol	87.5	87.5
EES11677	Sorghum	cytosol	72.02	70.76
TraesCS2A01G582100.1	Wheat	cytosol	72.02	70.76
TraesCS2B01G604800.1	Wheat	cytosol	71.43	70.18
HORVU2Hr1G123750.1	Barley	cytosol	70.83	69.59
TraesCS2D01G598000.1	Wheat	cytosol	70.83	69.59
GSMUA_Achr9P07960_001	Banana	cytosol	45.83	65.81
GSMUA_Achr5P07930_001	Banana	cytosol	66.07	65.29
GSMUA_Achr8P11390_001	Banana	cytosol	61.31	59.2
GSMUA_Achr7P16200_001	Banana	plastid	67.26	47.08
GSMUA_Achr5P24260_001	Banana	plasma membrane	73.21	41.41

Protein Annotations

MapMan:10.4.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0004602
GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0055114	GO:GO:0098869	InterPro:GPX_AS	InterPro:GPX_CS	EnsemblPlantsGene:GSMUA_Achr11G04010_001	EnsemblPlants:GSMUA_Achr11P04010_001
EnsemblPlants:GSMUA_Achr11T04010_001	InterPro:Glutathione_peroxidase	InterPro:IPR000889	UniProt:M0RP81	PFAM:PF00255	PIRSF:PIRSF000303
PRINTS:PR01011	ScanProsite:PS00460	ScanProsite:PS00763	PFscan:PS51355	PANTHER:PTHR11592	PANTHER:PTHR11592:SF42
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0002958CC6	:	:	:

Description

Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr11G04010_001]

Coordinates

chr11:-:2914728..2917696

Molecular Weight (calculated)

18523.1 Da

IEP (calculated)

6.522

GRAVY (calculated)

-0.280

Length

168 amino acids

Sequence
(BLAST)

001: MASSKSAASI HDFTVKDAMG KDVDLSMYKG KVLLIVNVAS QCGLTNSNYT ELSQLYEKYK GKDFEILAFP CNQFGGQEPG SNEEIVEFAC TRFKAEYPIF
101: DKVDVNGNNA APVYKFLKSS KGSILGDGIK WNFAKFLIDK DGHVVDRYAP TTSPLSIEKD IKKLLGEA

Best Arabidopsis Sequence Match ( AT4G11600.1 )
(BLAST)

001: MLRSSIRLLY IRRTSPLLRS LSSSSSSSSS KRFDSAKPLF NSHRIISLPI STTGAKLSRS EHSMAASSEP KSLYDFTVKD AKGNDVDLSI YKGKVLLIVN
101: VASQCGLTNS NYTELAQLYE KYKGHGFEIL AFPCNQFGNQ EPGTNEEIVQ FACTRFKAEY PIFDKVDVNG DKAAPVYKFL KSSKGGLFGD GIKWNFAKFL
201: VDKDGNVVDR FAPTTSPLSI EKDVKKLLGV TA

Arabidopsis Description

GPX6Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O48646]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.