Factsheet for Solyc08g080940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 6

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22892874
plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032154	Potato	mitochondrion	69.46	98.22
Solyc06g073460.2.1	Tomato	plastid	49.37	70.66
Solyc12g056230.1.1	Tomato	cytosol	48.54	68.24
Solyc12g056240.1.1	Tomato	cytosol	48.12	67.65
Solyc09g064850.2.1	Tomato	nucleus	44.77	62.94
Os04t0683850-00	Rice	cytosol	24.27	52.25
Solyc08g006720.2.1	Tomato	plastid	49.37	49.58

Protein Annotations

MapMan:10.4.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0004602
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0006979
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0047066	GO:GO:0055114
GO:GO:0098869	InterPro:GPX_AS	InterPro:GPX_CS	InterPro:Glutathione_peroxidase	InterPro:IPR000889	UniProt:K4CP92
PFAM:PF00255	PIRSF:PIRSF000303	PRINTS:PR01011	ScanProsite:PS00460	ScanProsite:PS00763	PFscan:PS51355
PANTHER:PTHR11592	PANTHER:PTHR11592:SF51	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc08g080940.2	EnsemblPlants:Solyc08g080940.2.1	InterPro:Thioredoxin-like_sf
UniParc:UPI000276BCDB	:	:	:	:	:

Description

Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial [Source:Projected from Arabidopsis thaliana (AT4G11600) UniProtKB/Swiss-Prot;Acc:O48646]

Coordinates

chr8:+:64084698..64087731

Molecular Weight (calculated)

26751.2 Da

IEP (calculated)

9.477

GRAVY (calculated)

-0.249

Length

239 amino acids

Sequence
(BLAST)

001: MLCSTARVLL IPKQNLSILR RFSSILRQTQ FNSVFNLPVS SFSKPIRTVL PNSLVTSKGF ELWGLRSDHT MASQSSNPQS VYDFTVKDAK GKDVDLSIYK
101: GKVLIIVNVA SQCGLTNSNY TDMTELYKKY KDQGLEILAF PCNQFGGQEP GNIEDIQQMV CTRFKAEYPI FDKVDVNGDN AAPLYRFLKS SKGGFFGDGI
201: KWNFSKFLID KEGHVVDRYS PTTSPASMEK DIKKLLGVA

Best Arabidopsis Sequence Match ( AT4G11600.1 )
(BLAST)

001: MLRSSIRLLY IRRTSPLLRS LSSSSSSSSS KRFDSAKPLF NSHRIISLPI STTGAKLSRS EHSMAASSEP KSLYDFTVKD AKGNDVDLSI YKGKVLLIVN
101: VASQCGLTNS NYTELAQLYE KYKGHGFEIL AFPCNQFGNQ EPGTNEEIVQ FACTRFKAEY PIFDKVDVNG DKAAPVYKFL KSSKGGLFGD GIKWNFAKFL
201: VDKDGNVVDR FAPTTSPLSI EKDVKKLLGV TA

Arabidopsis Description

GPX6Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O48646]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.