Factsheet for PGSC0003DMT400032154

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 3
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 14983062

msms PMID: 14983062 doi

Y Balmer, WH Vensel, CK Tanaka, WJ Hurkman, E Gelhaye, N Rouhier, JP Jacquot, W Manieri, P Schürmann, M Droux, BB Buchanan

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g080940.2.1	Tomato	plastid	98.22	69.46
PGSC0003DMT400012777	Potato	cytosol	69.82	69.41
PGSC0003DMT400012775	Potato	cytosol	68.64	68.24
Os04t0683850-00	Rice	cytosol	34.91	53.15
PGSC0003DMT400067601	Potato	plastid	66.86	47.48

Protein Annotations

MapMan:10.4.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0004602
GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0055114	GO:GO:0098869	InterPro:GPX_AS	InterPro:GPX_CS	InterPro:Glutathione_peroxidase	InterPro:IPR000889
UniProt:M1AWZ7	PFAM:PF00255	EnsemblPlantsGene:PGSC0003DMG400012344	PGSC:PGSC0003DMG400012344	EnsemblPlants:PGSC0003DMT400032154	PIRSF:PIRSF000303
PRINTS:PR01011	ScanProsite:PS00460	ScanProsite:PS00763	PFscan:PS51355	PANTHER:PTHR11592	PANTHER:PTHR11592:SF51
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0002950C18	:	:	:

Description

Phospholipid hydroperoxide glutathione peroxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400012344]

Coordinates

chr8:+:54675355..54678208

Molecular Weight (calculated)

18779.4 Da

IEP (calculated)

7.178

GRAVY (calculated)

-0.375

Length

169 amino acids

Sequence
(BLAST)

001: MASQSSNPQS VYDFTVKDAK GKDVDLSIYK GKVLIIVNVA SQCGLTNSNY TDMTELYKKY KDQGLEILAF PCNQFGGQEP GSIEDIQQMV CTRFKAEYPI
101: FDKVDVNGDN AAPLYKFLKS SKGGFFGDGI KWNFSKFLID KEGHVVDRYS PTTTPASMEK DIKKLLGVA

Best Arabidopsis Sequence Match ( AT4G11600.1 )
(BLAST)

001: MLRSSIRLLY IRRTSPLLRS LSSSSSSSSS KRFDSAKPLF NSHRIISLPI STTGAKLSRS EHSMAASSEP KSLYDFTVKD AKGNDVDLSI YKGKVLLIVN
101: VASQCGLTNS NYTELAQLYE KYKGHGFEIL AFPCNQFGNQ EPGTNEEIVQ FACTRFKAEY PIFDKVDVNG DKAAPVYKFL KSSKGGLFGD GIKWNFAKFL
201: VDKDGNVVDR FAPTTSPLSI EKDVKKLLGV TA

Arabidopsis Description

GPX6Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O48646]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.