CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 1
plastid 2
extracellular 3
endoplasmic reticulum 5
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31570.1	OQU92006	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0284900-01	Rice	cytosol	58.05	82.64
VIT_05s0102g00120.t01	Wine grape	cytosol	63.9	78.44
KRH41733	Soybean	cytosol	61.46	75.9
Bra018232.1-P	Field mustard	cytosol	62.44	75.74
CDY54730	Canola	cytosol	62.44	75.74
CDY10812	Canola	cytosol	62.44	75.74
Solyc06g073460.2.1	Tomato	plastid	60.98	74.85
AT2G31570.1	Thale cress	cytosol	61.46	74.56
CDY23931	Canola	cytosol	60.49	73.37
CDX84772	Canola	cytosol	60.49	73.37
Bra022853.1-P	Field mustard	cytosol	60.49	73.37
EES11249	Sorghum	cytosol	57.07	69.64
EES11677	Sorghum	cytosol	56.59	67.84
KRH60433	Soybean	extracellular	62.44	63.68
KXG31059	Sorghum	cytosol	40.49	61.03
KXG39415	Sorghum	plastid	54.63	56.28
KXG39330	Sorghum	cytosol	47.32	48.99
EER87981	Sorghum	plastid	54.63	48.28

Protein Annotations

MapMan:10.4.2	Gene3D:3.40.30.10	EntrezGene:8155431	UniProt:C6JRI9	ProteinID:EES20100.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004601	GO:GO:0004602	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0006950	GO:GO:0006979
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0055114
GO:GO:0098869	InterPro:GPX_AS	InterPro:GPX_CS	InterPro:Glutathione_peroxidase	InterPro:IPR000889	ProteinID:KXG19056.1
EnsemblPlants:OQU83353	ProteinID:OQU83353	ProteinID:OQU83353.1	PFAM:PF00255	PIRSF:PIRSF000303	PRINTS:PR01011
ScanProsite:PS00460	ScanProsite:PS00763	PFscan:PS51355	PANTHER:PTHR11592	PANTHER:PTHR11592:SF51	EnsemblPlantsGene:SORBI_3005G110442
SUPFAM:SSF52833	TMHMM:TMhelix	InterPro:Thioredoxin-like_sf	UniParc:UPI0001AFF694	RefSeq:XP_002489307.1	SEG:seg

Description

hypothetical protein

Coordinates

chr5:+:26718290..26733932

Molecular Weight (calculated)

22685.5 Da

IEP (calculated)

5.427

GRAVY (calculated)

-0.092

Length

205 amino acids

Sequence
(BLAST)

001: MIEATRGLRG PRLLLSVAVL VLAIALVFRS LTPAVPQMAD DLPTSIYDIT VKDIRGDDIE LSEYAGKVLL IVNVASKCGL TSSNYKELNV LYEKYREKGL
101: EILAFPCNQF AGQEPGTNED IQETVCSRFK AEFPIFDKID VNGKDAAPLY KYLKSQKGGF LGDGIKWNFT KFLVDKDGKV VERYAPTTSP LKIENDIQKL
201: LGTAS

Best Arabidopsis Sequence Match ( AT2G31570.1 )
(BLAST)

001: MADESPKSIY DFTVKDIGGN DVSLDQYKGK TLLVVNVASK CGLTDANYKE LNVLYEKYKE QGLEILAFPC NQFLGQEPGN NEEIQQTVCT RFKAEFPIFD
101: KVDVNGKNTA PLYKYLKAEK GGLLIDAIKW NFTKFLVSPD GKVLQRYSPR TSPLQFEKDI QTALGQASS

Arabidopsis Description

GPX2Probable glutathione peroxidase 2 [Source:UniProtKB/Swiss-Prot;Acc:O04922]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.