CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01688
EES19684
OQU87774

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63080.1	EES01688	AT1G07000.1	21798944
AT3G63080.1	EES19684	AT1G07000.1	21798944
AT3G63080.1	OQU87774	AT1G07000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047448_P002	Maize	extracellular, mitochondrion, plasma membrane	77.27	90.0
Os03t0358100-01	Rice	plasma membrane	74.24	86.98
TraesCS4A01G142000.1	Wheat	cytosol	67.68	77.91
TraesCS4D01G162000.1	Wheat	plastid	72.73	77.01
TraesCS4B01G152800.1	Wheat	cytosol	72.73	77.01
CDY66093	Canola	cytosol	62.12	72.35
HORVU4Hr1G035380.1	Barley	cytosol	73.23	71.43
GSMUA_Achr5P07930_001	Banana	cytosol	61.11	71.18
CDX80155	Canola	cytosol	61.11	71.18
CDX80153	Canola	cytosol	61.11	71.18
VIT_07s0104g00320.t01	Wine grape	cytosol	61.11	71.18
Bra004409.1-P	Field mustard	cytosol	61.11	71.18
AT2G48150.1	Thale cress	cytosol	61.11	71.18
CDY27457	Canola	cytosol	51.01	71.13
KRH67169	Soybean	cytosol	60.1	70.0
KRG95489	Soybean	cytosol	61.11	69.94
CDY72064	Canola	cytosol	61.11	69.54
Solyc09g064850.2.1	Tomato	nucleus	59.09	68.82
AT3G63080.1	Thale cress	cytosol	60.1	68.79
CDX79424	Canola	cytosol	60.61	68.18
CDX67915	Canola	cytosol	60.61	68.18
CDY15038	Canola	cytosol	61.62	65.24
CDX89171	Canola	cytosol	58.59	65.17
EES11249	Sorghum	cytosol	54.55	64.29
CDX93937	Canola	cytosol	58.59	63.74
KRH71458	Soybean	endoplasmic reticulum	53.54	62.35
KRH31991	Soybean	cytosol	53.03	61.76
EES11677	Sorghum	cytosol	53.03	61.4
Bra021456.1-P	Field mustard	cytosol	62.12	60.0
KXG31059	Sorghum	cytosol	38.89	56.62
KXG39415	Sorghum	plastid	51.01	50.75
Bra003522.1-P	Field mustard	cytosol	60.1	50.21
OQU83353	Sorghum	endoplasmic reticulum	48.99	47.32
EER87981	Sorghum	plastid	51.52	43.97

Protein Annotations

MapMan:10.4.2	Gene3D:3.40.30.10	UniProt:A0A1B6QN36	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601
GO:GO:0004602	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0055114	GO:GO:0098869	InterPro:GPX_AS	InterPro:GPX_CS	InterPro:Glutathione_peroxidase
InterPro:IPR000889	EnsemblPlants:KXG39330	ProteinID:KXG39330	ProteinID:KXG39330.1	PFAM:PF00255	PIRSF:PIRSF000303
PRINTS:PR01011	ScanProsite:PS00460	ScanProsite:PS00763	PFscan:PS51355	PANTHER:PTHR11592	PANTHER:PTHR11592:SF17
EnsemblPlantsGene:SORBI_3001G365800	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0001C809EF	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:65429546..65431713

Molecular Weight (calculated)

22300.6 Da

IEP (calculated)

7.765

GRAVY (calculated)

-0.232

Length

198 amino acids

Sequence
(BLAST)

001: MGAAESVPET SIHEFTVKDC NGKEVSLETY KGKVLLVVNV ASKCGFTEVN YTQLTELYRK YRDKDFEILA FPCNQFLRQE PGSNQQIKDF ACTRFKAEYP
101: VFQKVRVNGP DAAPVYKFLK ASKPGLFGSA RVKWNFTKFL VDKNGKVVER YGTSTAPMSI EVPPSFPLSV SVSPFSDVCL FLMDWCFFDF AEGHPEGP

Best Arabidopsis Sequence Match ( AT2G48150.1 )
(BLAST)

001: MGASASVPER SVHQFTVKDS SGKDLNMSIY QGKVLLIVNV ASKCGFTETN YTQLTELYRK YKDQDFEILA FPCNQFLYQE PGTSQEAHEF ACERFKAEYP
101: VFQKVRVNGQ NAAPIYKFLK ASKPTFLGSR IKWNFTKFLV GKDGLVIDRY GTMVTPLSIE KDIKKALEDA

Arabidopsis Description

GPX4Probable glutathione peroxidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L910]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.