Factsheet for TraesCS6D01G228800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G274500.1
TraesCS6B01G302000.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11600.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT4G11600.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT4G11600.1	TraesCS6D01G254800.1	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G278100.1	Wheat	cytosol	95.27	95.27
TraesCS2D01G407700.1	Wheat	cytosol	91.72	92.26
Bra035211.1-P	Field mustard	cytosol	85.8	84.8
CDX86767	Canola	cytosol	85.8	84.8
CDY70265	Canola	cytosol	85.21	84.21
KXG31059	Sorghum	cytosol	63.91	79.41
Zm00001d029089_P001	Maize	cytosol	76.92	78.31
TraesCS2D01G598000.1	Wheat	cytosol	73.37	72.51
HORVU6Hr1G063830.2	Barley	plastid	98.22	70.04
TraesCS6A01G246400.1	Wheat	mitochondrion, plastid	98.22	70.04
Zm00001d029085_P001	Maize	plastid	50.3	69.67
KXG39415	Sorghum	plastid	81.07	68.84
Os02t0664000-01	Rice	extracellular	92.9	65.97
Zm00001d051392_P001	Maize	mitochondrion	95.27	65.45
CDY37628	Canola	mitochondrion, plastid	84.62	62.45
CDY25288	Canola	mitochondrion, plastid	84.62	62.45
Bra033140.1-P	Field mustard	mitochondrion, plastid	84.62	62.45
AT4G11600.1	Thale cress	mitochondrion	84.62	61.64
TraesCS4D01G162000.1	Wheat	plastid	65.09	58.82
TraesCS7D01G152400.1	Wheat	plastid	70.41	51.97

Protein Annotations

MapMan:10.4.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004602	GO:GO:0006950
GO:GO:0006979	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0048831	GO:GO:0055114
GO:GO:2000280	InterPro:GPX_AS	InterPro:GPX_CS	InterPro:Glutathione_peroxidase	InterPro:IPR000889	PFAM:PF00255
PIRSF:PIRSF000303	PRINTS:PR01011	ScanProsite:PS00460	ScanProsite:PS00763	PFscan:PS51355	PANTHER:PTHR11592
PANTHER:PTHR11592:SF42	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	EnsemblPlantsGene:TraesCS6D01G228800	EnsemblPlants:TraesCS6D01G228800.1	TIGR:cd00340
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:319707792..319709564

Molecular Weight (calculated)

18646.0 Da

IEP (calculated)

5.793

GRAVY (calculated)

-0.269

Length

169 amino acids

Sequence
(BLAST)

001: MAAAASSASS VHDFTVKDAS GKDVDLSTYK GKVLLIVNVA SQCGLTNSNY TELAQLYEKY KDQGFEILAF PCNQFGGQEP GTNEEIVQFA CTRFKAEYPI
101: FDKVDVNGDN VAPVYKFLKS SKGSLFGDNI KWNFSKFLVD KEGHVVDRYA PTTSPLSIEK DIKKLLASY

Best Arabidopsis Sequence Match ( AT4G11600.1 )
(BLAST)

001: MLRSSIRLLY IRRTSPLLRS LSSSSSSSSS KRFDSAKPLF NSHRIISLPI STTGAKLSRS EHSMAASSEP KSLYDFTVKD AKGNDVDLSI YKGKVLLIVN
101: VASQCGLTNS NYTELAQLYE KYKGHGFEIL AFPCNQFGNQ EPGTNEEIVQ FACTRFKAEY PIFDKVDVNG DKAAPVYKFL KSSKGGLFGD GIKWNFAKFL
201: VDKDGNVVDR FAPTTSPLSI EKDVKKLLGV TA

Arabidopsis Description

GPX6Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O48646]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.