Factsheet for TraesCS6A01G246400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G274500.1
TraesCS6B01G302000.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11600.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT4G11600.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT4G11600.1	TraesCS6D01G254800.1	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G228800.1	Wheat	cytosol	70.04	98.22
TraesCS6B01G278100.1	Wheat	cytosol	67.51	94.67
HORVU6Hr1G063830.2	Barley	plastid	93.25	93.25
Bra035211.1-P	Field mustard	cytosol	60.76	84.21
CDX86767	Canola	cytosol	60.76	84.21
CDY70265	Canola	cytosol	60.34	83.63
KXG31059	Sorghum	cytosol	45.99	80.15
Os02t0664000-01	Rice	extracellular	79.75	79.41
Zm00001d029089_P001	Maize	cytosol	54.43	77.71
Zm00001d051392_P001	Maize	mitochondrion	79.75	76.83
TraesCS2A01G582100.1	Wheat	cytosol	51.48	71.34
Zm00001d029085_P001	Maize	plastid	35.44	68.85
KXG39415	Sorghum	plastid	57.81	68.84
AT4G11600.1	Thale cress	mitochondrion	65.4	66.81
CDY25288	Canola	mitochondrion, plastid	64.14	66.38
Bra033140.1-P	Field mustard	mitochondrion, plastid	64.14	66.38
CDY37628	Canola	mitochondrion, plastid	63.71	65.94
TraesCS4A01G142000.1	Wheat	cytosol	42.19	58.14
TraesCS7A01G150500.1	Wheat	plastid	53.16	55.02

Protein Annotations

MapMan:10.4.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004602	GO:GO:0005575
GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829
GO:GO:0005886	GO:GO:0006950	GO:GO:0006979	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009651	GO:GO:0016020	GO:GO:0046686
GO:GO:0048046	GO:GO:0048831	GO:GO:0055114	GO:GO:2000280	InterPro:GPX_AS	InterPro:GPX_CS
InterPro:Glutathione_peroxidase	InterPro:IPR000889	PFAM:PF00255	PIRSF:PIRSF000303	PRINTS:PR01011	ScanProsite:PS00460
ScanProsite:PS00763	PFscan:PS51355	PANTHER:PTHR11592	PANTHER:PTHR11592:SF42	SUPFAM:SSF52833	SignalP:SignalP-noTM
InterPro:Thioredoxin-like_sf	EnsemblPlantsGene:TraesCS6A01G246400	EnsemblPlants:TraesCS6A01G246400.1	TIGR:cd00340	SEG:seg	:

Description

No Description!

Coordinates

chr6A:-:457402607..457404623

Molecular Weight (calculated)

25795.9 Da

IEP (calculated)

9.559

GRAVY (calculated)

-0.086

Length

237 amino acids

Sequence
(BLAST)

001: MPSRPAPLVH RLRLLRSAVV CSSSALLPCS RPRLAIPFAQ PPLRGPAFAA ASSPLLRSVG ARFSLFSSMA AAASSASSIH DFTVKDASGK DVDLSTYKGK
101: VLLIVNVASQ CGLTNSNYTE LAQLYEKYKD QGFEILAFPC NQFGGQEPGT NEEIVQFACT RFKAEYPIFD KVDVNGDNVA PVYKFLKSSK GSLFGDNIKW
201: NFSKFLVDKE GRVVDRYAPT TSPLSIEKDI KKLLASS

Best Arabidopsis Sequence Match ( AT4G11600.1 )
(BLAST)

001: MLRSSIRLLY IRRTSPLLRS LSSSSSSSSS KRFDSAKPLF NSHRIISLPI STTGAKLSRS EHSMAASSEP KSLYDFTVKD AKGNDVDLSI YKGKVLLIVN
101: VASQCGLTNS NYTELAQLYE KYKGHGFEIL AFPCNQFGNQ EPGTNEEIVQ FACTRFKAEY PIFDKVDVNG DKAAPVYKFL KSSKGGLFGD GIKWNFAKFL
201: VDKDGNVVDR FAPTTSPLSI EKDVKKLLGV TA

Arabidopsis Description

GPX6Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O48646]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.