Factsheet for Zm00001d029085_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017793_P001
Zm00001d051589_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11600.1	Zm00001d017793_P001	AT3G27960.1	21798944
AT4G11600.1	Zm00001d051589_P001	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029089_P001	Maize	cytosol	94.26	69.28
Zm00001d002704_P001	Maize	cytosol	71.31	51.79
Zm00001d026154_P002	Maize	cytosol	73.77	51.14
TraesCS6D01G228800.1	Wheat	cytosol	69.67	50.3
TraesCS6B01G278100.1	Wheat	cytosol	69.67	50.3
CDY70265	Canola	cytosol	70.49	50.29
Bra035211.1-P	Field mustard	cytosol	69.67	49.71
CDX86767	Canola	cytosol	69.67	49.71
KXG39415	Sorghum	plastid	79.51	48.74
Zm00001d047448_P002	Maize	extracellular, mitochondrion, plasma membrane	57.38	41.18
Os02t0664000-01	Rice	extracellular	71.31	36.55
Bra033140.1-P	Field mustard	mitochondrion, plastid	68.03	36.24
CDY37628	Canola	mitochondrion, plastid	68.03	36.24
CDY25288	Canola	mitochondrion, plastid	68.03	36.24
HORVU6Hr1G063830.2	Barley	plastid	69.67	35.87
Zm00001d051392_P001	Maize	mitochondrion	72.13	35.77
TraesCS6A01G246400.1	Wheat	mitochondrion, plastid	68.85	35.44
AT4G11600.1	Thale cress	mitochondrion	67.21	35.34
Zm00001d037079_P001	Maize	plastid	57.38	30.43

Protein Annotations

MapMan:10.4.2	Gene3D:3.40.30.10	UniProt:A0A1D6K2D3	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601
GO:GO:0004602	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0055114	GO:GO:0098869	InterPro:GPX_CS	InterPro:Glutathione_peroxidase	InterPro:IPR000889
ProteinID:ONL97846.1	PFAM:PF00255	PIRSF:PIRSF000303	PRINTS:PR01011	ScanProsite:PS00763	PFscan:PS51355
PANTHER:PTHR11592	PANTHER:PTHR11592:SF42	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0008445026	EnsemblPlantsGene:Zm00001d029085
EnsemblPlants:Zm00001d029085_P001	EnsemblPlants:Zm00001d029085_T001	:	:	:	:

Description

Probable phospholipid hydroperoxide glutathione peroxidase 6 mitochondrial

Coordinates

chr1:+:57453167..57455529

Molecular Weight (calculated)

13466.2 Da

IEP (calculated)

9.871

GRAVY (calculated)

-0.272

Length

122 amino acids

Sequence
(BLAST)

001: MAAASSVHGF TVKISRSLRV AFPCNQFGGQ EPGTSEEIAQ LVCARFKAKY PILHKVDVNG EDAAPIYKFL KSSKTGPMGE DIKWNFAKFL VDRQGHVAER
101: YAPTTYPLSI QKDIKKLLGG SY

Best Arabidopsis Sequence Match ( AT4G11600.1 )
(BLAST)

001: MLRSSIRLLY IRRTSPLLRS LSSSSSSSSS KRFDSAKPLF NSHRIISLPI STTGAKLSRS EHSMAASSEP KSLYDFTVKD AKGNDVDLSI YKGKVLLIVN
101: VASQCGLTNS NYTELAQLYE KYKGHGFEIL AFPCNQFGNQ EPGTNEEIVQ FACTRFKAEY PIFDKVDVNG DKAAPVYKFL KSSKGGLFGD GIKWNFAKFL
201: VDKDGNVVDR FAPTTSPLSI EKDVKKLLGV TA

Arabidopsis Description

GPX6Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O48646]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.