Factsheet for Zm00001d002704_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017793_P001
Zm00001d051589_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11600.1	Zm00001d017793_P001	AT3G27960.1	21798944
AT4G11600.1	Zm00001d051589_P001	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11249	Sorghum	cytosol	97.62	97.62
TraesCS2B01G429100.1	Wheat	golgi, plastid	93.45	93.45
TraesCS2D01G407700.1	Wheat	cytosol	93.45	93.45
Os04t0556300-01	Rice	plastid	92.86	92.86
Zm00001d026154_P002	Maize	cytosol	92.86	88.64
Bra035211.1-P	Field mustard	cytosol	87.5	85.96
CDX86767	Canola	cytosol	87.5	85.96
CDY70265	Canola	cytosol	86.9	85.38
Zm00001d029089_P001	Maize	cytosol	78.57	79.52
Zm00001d029085_P001	Maize	plastid	51.79	71.31
Zm00001d051392_P001	Maize	mitochondrion	94.05	64.23
Zm00001d047448_P002	Maize	extracellular, mitochondrion, plasma membrane	64.88	64.12
CDY37628	Canola	mitochondrion, plastid	86.31	63.32
CDY25288	Canola	mitochondrion, plastid	86.31	63.32
Bra033140.1-P	Field mustard	mitochondrion, plastid	86.31	63.32
AT4G11600.1	Thale cress	mitochondrion	85.12	61.64
Zm00001d037079_P001	Maize	plastid	70.83	51.74

Protein Annotations

MapMan:10.4.2	EntrezGene:100273297	Gene3D:3.40.30.10	ProteinID:AAT42154.1	EMBL:BT040716	EMBL:BT066291
EMBL:EU961132	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0004602	GO:GO:0006950
GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009635	GO:GO:0009987	GO:GO:0016491
GO:GO:0055114	GO:GO:0098869	InterPro:GPX_AS	InterPro:GPX_CS	InterPro:Glutathione_peroxidase	InterPro:IPR000889
ProteinID:ONM15131.1	ProteinID:ONM15132.1	PFAM:PF00255	PIRSF:PIRSF000303	PRINTS:PR01011	ScanProsite:PS00460
ScanProsite:PS00763	PFscan:PS51355	PANTHER:PTHR11592	PANTHER:PTHR11592:SF42	UniProt:Q6JAH6	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	UniParc:UPI00003B042B	EnsemblPlantsGene:Zm00001d002704	EnsemblPlants:Zm00001d002704_P001	EnsemblPlants:Zm00001d002704_T001	:

Description

Glutathione peroxidase

Coordinates

chr2:-:19808074..19812687

Molecular Weight (calculated)

18460.8 Da

IEP (calculated)

7.180

GRAVY (calculated)

-0.261

Length

168 amino acids

Sequence
(BLAST)

001: MAASSTATSV HDFIVKDASG KDVDLSTYKG KVLLIVNVAS QCGLTNSNYT ELAQLYEKYK DQGFEILAFP CNQFGGQEPG TNEEIVQFAC TRFKAEYPIF
101: DKVDVNGSNA APIYKFLKSS KGGLFGDSIK WNFSKFLVDK EGRVVDRYAP TTSPLSIEKD IKKLLGSS

Best Arabidopsis Sequence Match ( AT4G11600.1 )
(BLAST)

001: MLRSSIRLLY IRRTSPLLRS LSSSSSSSSS KRFDSAKPLF NSHRIISLPI STTGAKLSRS EHSMAASSEP KSLYDFTVKD AKGNDVDLSI YKGKVLLIVN
101: VASQCGLTNS NYTELAQLYE KYKGHGFEIL AFPCNQFGNQ EPGTNEEIVQ FACTRFKAEY PIFDKVDVNG DKAAPVYKFL KSSKGGLFGD GIKWNFAKFL
201: VDKDGNVVDR FAPTTSPLSI EKDVKKLLGV TA

Arabidopsis Description

GPX6Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O48646]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.