Factsheet for TraesCS2B01G429100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 22160430
plastid: 22736107
golgi: 23128297
golgi: 25769308

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G274500.1
TraesCS6B01G302000.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11600.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT4G11600.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT4G11600.1	TraesCS6D01G254800.1	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G407700.1	Wheat	cytosol	98.81	98.81
EES11249	Sorghum	cytosol	94.64	94.64
Zm00001d002704_P001	Maize	cytosol	93.45	93.45
Os04t0556300-01	Rice	plastid	92.26	92.26
TraesCS6B01G278100.1	Wheat	cytosol	89.29	88.76
Zm00001d026154_P002	Maize	cytosol	91.07	86.93
Bra035211.1-P	Field mustard	cytosol	84.52	83.04
CDX86767	Canola	cytosol	84.52	83.04
CDY70265	Canola	cytosol	83.93	82.46
TraesCS2B01G604800.1	Wheat	cytosol	72.02	70.76
Bra033140.1-P	Field mustard	mitochondrion, plastid	82.74	60.7
CDY25288	Canola	mitochondrion, plastid	82.74	60.7
CDY37628	Canola	mitochondrion, plastid	82.74	60.7
AT4G11600.1	Thale cress	mitochondrion	82.14	59.48
TraesCS4B01G152800.1	Wheat	cytosol	64.88	58.29
TraesCS7B01G054400.1	Wheat	plastid	70.24	51.98

Protein Annotations

MapMan:10.4.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004602	GO:GO:0006950
GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0055114	InterPro:GPX_AS	InterPro:GPX_CS
InterPro:Glutathione_peroxidase	InterPro:IPR000889	PFAM:PF00255	PIRSF:PIRSF000303	PRINTS:PR01011	ScanProsite:PS00460
ScanProsite:PS00763	PFscan:PS51355	PANTHER:PTHR11592	PANTHER:PTHR11592:SF42	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
EnsemblPlantsGene:TraesCS2B01G429100	EnsemblPlants:TraesCS2B01G429100.1	TIGR:cd00340	:	:	:

Description

No Description!

Coordinates

chr2B:-:616474097..616475628

Molecular Weight (calculated)

18411.8 Da

IEP (calculated)

7.337

GRAVY (calculated)

-0.249

Length

168 amino acids

Sequence
(BLAST)

001: MAAASSATSV HDFTVKDASG KDVDLSVYKG KVLLIVNVAS QCGLTNSNYT ELSQLYPKYK DQGFEILAFP CNQFGGQEPG TNDEIVQFAC TRFKAEYPIF
101: DKVDVNGSNV SPLYKFLKSS KGGLFGDSIK WNFSKFLVDK EGHVVDRYAP TTSPLSIEKD IKKLLGSS

Best Arabidopsis Sequence Match ( AT4G11600.1 )
(BLAST)

001: MLRSSIRLLY IRRTSPLLRS LSSSSSSSSS KRFDSAKPLF NSHRIISLPI STTGAKLSRS EHSMAASSEP KSLYDFTVKD AKGNDVDLSI YKGKVLLIVN
101: VASQCGLTNS NYTELAQLYE KYKGHGFEIL AFPCNQFGNQ EPGTNEEIVQ FACTRFKAEY PIFDKVDVNG DKAAPVYKFL KSSKGGLFGD GIKWNFAKFL
201: VDKDGNVVDR FAPTTSPLSI EKDVKKLLGV TA

Arabidopsis Description

GPX6Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O48646]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.