Factsheet for TraesCS7D01G279300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16481623
plastid: 16595579
plastid: 18419817
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms PMID: 16481623 doi

Y Balmer, WH Vensel, N Cai, W Manieri, P Schürmann, WJ Hurkman, BB Buchanan

Department of Plant and Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23940.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT3G23940.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT3G23940.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT3G23940.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT3G23940.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT3G23940.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G180500.1	Wheat	plastid	99.33	99.33
TraesCS7A01G280700.1	Wheat	plastid	99.33	99.33
HORVU7Hr1G059460.4	Barley	mitochondrion, peroxisome, plastid	95.12	93.54
Os08t0559600-01	Rice	plastid	93.1	93.1
EES15173	Sorghum	plastid	92.59	93.06
Zm00001d049929_P002	Maize	plastid	92.42	91.2
Zm00001d031929_P005	Maize	plastid	91.92	89.22
GSMUA_Achr4P05470_001	Banana	cytosol, mitochondrion, plastid	72.05	88.8
KRH20898	Soybean	nucleus	79.97	79.03
PGSC0003DMT400049308	Potato	plastid	80.13	77.91
Solyc05g053540.2.1	Tomato	endoplasmic reticulum, nucleus, plastid	79.97	77.74
Solyc12g043020.1.1	Tomato	plastid	80.13	77.4
VIT_05s0051g00830.t01	Wine grape	plastid	78.79	76.72
AT3G23940.1	Thale cress	plastid	78.28	76.48
CDY46350	Canola	plastid	77.78	76.36
CDY18059	Canola	plastid	78.11	76.19
Bra028367.1-P	Field mustard	plastid	77.95	76.03
CDX77443	Canola	plastid	77.95	75.78
Bra015023.1-P	Field mustard	plastid	77.95	75.78
CDY45563	Canola	plastid	77.78	75.61
PGSC0003DMT400073716	Potato	cytosol	14.14	73.68

Protein Annotations

KEGG:00290+4.2.1.9	KEGG:00770+4.2.1.9	Gene3D:3.50.30.80	MapMan:4.1.2.2.8.5	MapMan:4.1.3.2.3	InterPro:DiOHA_6PGluconate_deHydtase
InterPro:DiOHA_6PGluconate_deHydtase_CS	InterPro:DihydroxyA_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004160	GO:GO:0005488
GO:GO:0005507	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009082	GO:GO:0009507
GO:GO:0009536	GO:GO:0009553	GO:GO:0009555	GO:GO:0009570	GO:GO:0009628	GO:GO:0009651
GO:GO:0009987	GO:GO:0048364	InterPro:IlvD/EDD_N	HAMAP:MF_00012	PFAM:PF00920	ScanProsite:PS00886
ScanProsite:PS00887	PANTHER:PTHR21000	PANTHER:PTHR21000:SF17	SUPFAM:SSF143975	SUPFAM:SSF52016	TIGRFAMs:TIGR00110
EnsemblPlantsGene:TraesCS7D01G279300	EnsemblPlants:TraesCS7D01G279300.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7D:+:270697723..270702612

Molecular Weight (calculated)

63148.2 Da

IEP (calculated)

6.202

GRAVY (calculated)

-0.090

Length

594 amino acids

Sequence
(BLAST)

001: MQSLALTSPS LPAAAPTPAS GRRLATRVRA AAVSDEPKLN KYSARITEPK SQGASQAVLY GVGLTDADLR KPQVGVSSVW YEGNTCNMHL LQLAEAVRDG
101: IRDAGMVAFR FNTVGVSDAI SMGTRGMCYS LQSRDLIADS IETVMGAQHY DANISIPGCD KNMPGTIMAM GRLNRPSIMV YGGTIKPGHF QGNSYDIVSA
201: FQSYGEFVSG SISDEERKNV LRNSCPGAGA CGGMYTANTM ASAIETMGMS LPYSSSTPAE DPLKLDECRL AGKYLLELLK MDLKPRDIIT EKSLRNAMVI
301: IMALGGSTNA VLHLIAIARS VGLQLTLDDF QKVSDQVPFL ADLKPSGKYV MEDLHKIGGT PAVIHYLLEQ GLLDGDCMTV TGKTLAENAK IFPPLSEGQQ
401: IIRRLDNPIK STGHIQILYG NLAPEGSVAK ITGKEGLFFS GPALVFDGEE SMITAISENP ANFKGKVVVI RGEGPKGGPG MPEMLTPTSA IMGAGLGKEC
501: ALLTDGRFSG GSHGFVVGHI CPEAQEGGPI GLVENGDTIT IDVGKKVIDV DLTEDQLEQR QRKWSPPPHK VTSGALWKYI KLVSSASSGC VTDE

Best Arabidopsis Sequence Match ( AT3G23940.1 )
(BLAST)

001: MQATIFSPRA TLFPCKPLLP SHNVNSRRPS IISCSAQSVT ADPSPPITDT NKLNKYSSRI TEPKSQGGSQ AILHGVGLSD DDLLKPQIGI SSVWYEGNTC
101: NMHLLKLSEA VKEGVENAGM VGFRFNTIGV SDAISMGTRG MCFSLQSRDL IADSIETVMS AQWYDGNISI PGCDKNMPGT IMAMGRLNRP GIMVYGGTIK
201: PGHFQDKTYD IVSAFQSYGE FVSGSISDEQ RKTVLHHSCP GAGACGGMYT ANTMASAIEA MGMSLPYSSS IPAEDPLKLD ECRLAGKYLL ELLKMDLKPR
301: DIITPKSLRN AMVSVMALGG STNAVLHLIA IARSVGLELT LDDFQKVSDA VPFLADLKPS GKYVMEDIHK IGGTPAVLRY LLELGLMDGD CMTVTGQTLA
401: QNLENVPSLT EGQEIIRPLS NPIKETGHIQ ILRGDLAPDG SVAKITGKEG LYFSGPALVF EGEESMLAAI SADPMSFKGT VVVIRGEGPK GGPGMPEMLT
501: PTSAIMGAGL GKECALLTDG RFSGGSHGFV VGHICPEAQE GGPIGLIKNG DIITIDIGKK RIDTQVSPEE MNDRRKKWTA PAYKVNRGVL YKYIKNVQSA
601: SDGCVTDE

Arabidopsis Description

DHADDihydroxy-acid dehydratase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.