Factsheet for PGSC0003DMT400049308

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g053540.2.1	Tomato	endoplasmic reticulum, nucleus, plastid	98.04	98.04
PGSC0003DMT400073716	Potato	cytosol	18.17	97.37
GSMUA_Achr4P05470_001	Banana	cytosol, mitochondrion, plastid	68.41	86.72
EES15173	Sorghum	plastid	78.72	81.39
Os08t0559600-01	Rice	plastid	79.05	81.31
VIT_05s0051g00830.t01	Wine grape	plastid	80.69	80.82
AT3G23940.1	Thale cress	plastid	80.36	80.76
CDY46350	Canola	plastid	79.71	80.5
CDY45563	Canola	plastid	80.36	80.36
Bra015023.1-P	Field mustard	plastid	80.2	80.2
CDX77443	Canola	plastid	80.2	80.2
TraesCS7D01G279300.1	Wheat	plastid	77.91	80.13
TraesCS7B01G180500.1	Wheat	plastid	77.91	80.13
Zm00001d049929_P002	Maize	plastid	78.89	80.07
KRH20898	Soybean	nucleus	78.72	80.03
TraesCS7A01G280700.1	Wheat	plastid	77.74	79.97
Bra028367.1-P	Field mustard	plastid	79.54	79.8
CDY18059	Canola	plastid	79.38	79.64
Zm00001d031929_P005	Maize	plastid	78.72	78.59
HORVU7Hr1G059460.4	Barley	mitochondrion, peroxisome, plastid	76.92	77.81

Protein Annotations

KEGG:00290+4.2.1.9	KEGG:00770+4.2.1.9	EntrezGene:102606211	Gene3D:3.50.30.80	MapMan:4.1.2.2.8.5	MapMan:4.1.3.2.3
InterPro:DiOHA_6PGluconate_deHydtase	InterPro:DiOHA_6PGluconate_deHydtase_CS	InterPro:DihydroxyA_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004160
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009082	GO:GO:0009987	InterPro:IlvD/EDD_N
UniProt:M1BNJ2	HAMAP:MF_00012	PFAM:PF00920	EnsemblPlantsGene:PGSC0003DMG400019163	PGSC:PGSC0003DMG400019163	EnsemblPlants:PGSC0003DMT400049308
ScanProsite:PS00886	ScanProsite:PS00887	PANTHER:PTHR21000	PANTHER:PTHR21000:SF17	SUPFAM:SSF143975	SUPFAM:SSF52016
TIGRFAMs:TIGR00110	UniParc:UPI0002967F15	RefSeq:XP_006349441.1	SEG:seg	:	:

Description

Dihydroxy-acid dehydratase [Source:PGSC_GENE;Acc:PGSC0003DMG400019163]

Coordinates

chr5:-:48871388..48878815

Molecular Weight (calculated)

65708.7 Da

IEP (calculated)

6.838

GRAVY (calculated)

-0.143

Length

611 amino acids

Sequence
(BLAST)

001: MQANLLSPPL HPTTPKIPSF NTQCRPYYSR LPPTLTIRAA GAPPETTNST IPSQKLNKFS SRITEPKSQG GSQAILYGVG LSDDDMKKPQ IGISSVWYEG
101: NTCNMHLLKL AEAVKEGVLE ADMVGFRFNT IGVSDAISMG TRGMCFSLQS RDLIADSIET VMSAQWYDGN IAIPGCDKNM PGTIMAMGRL NRPSIMIYGG
201: TIKPGHFQGH TFDIISAFQV YGEYVSGGVS DEQRMNVVRN SCPGAGACGG MYTANTMASA IETLGMSLPY SSSTPAEDPL KLDECRLAGK YLLELLKMDL
301: KPRDIITKRS LRNAMVMVMA LGGSTNAVLH LIAIARSVGL ELTLDDFQKV SDKVPFLADL KPSGKYVMED VHKIGGTPAV IRHLLELGYL DGDCMTVTGK
401: TLAENAKLFP SLAEGQQIIR PLSNPIKETG HIQILYGNLA PEGSVAKITG KEGMYFKGPA LVFEGEEAMI AAISEDPLSF KGKVVVIRGE GPKGGPGMPE
501: MLTPTSAIMG AGLGKDVALL TDGRFSGGSH GYVVGHICPE AQEGGPIGLV QNGDIITIDI QKKKMDVQLS DEELEQRRKN WTPPAYKADR GVLYKYIKNV
601: QSASKGCVTD E

Best Arabidopsis Sequence Match ( AT3G23940.1 )
(BLAST)

001: MQATIFSPRA TLFPCKPLLP SHNVNSRRPS IISCSAQSVT ADPSPPITDT NKLNKYSSRI TEPKSQGGSQ AILHGVGLSD DDLLKPQIGI SSVWYEGNTC
101: NMHLLKLSEA VKEGVENAGM VGFRFNTIGV SDAISMGTRG MCFSLQSRDL IADSIETVMS AQWYDGNISI PGCDKNMPGT IMAMGRLNRP GIMVYGGTIK
201: PGHFQDKTYD IVSAFQSYGE FVSGSISDEQ RKTVLHHSCP GAGACGGMYT ANTMASAIEA MGMSLPYSSS IPAEDPLKLD ECRLAGKYLL ELLKMDLKPR
301: DIITPKSLRN AMVSVMALGG STNAVLHLIA IARSVGLELT LDDFQKVSDA VPFLADLKPS GKYVMEDIHK IGGTPAVLRY LLELGLMDGD CMTVTGQTLA
401: QNLENVPSLT EGQEIIRPLS NPIKETGHIQ ILRGDLAPDG SVAKITGKEG LYFSGPALVF EGEESMLAAI SADPMSFKGT VVVIRGEGPK GGPGMPEMLT
501: PTSAIMGAGL GKECALLTDG RFSGGSHGFV VGHICPEAQE GGPIGLIKNG DIITIDIGKK RIDTQVSPEE MNDRRKKWTA PAYKVNRGVL YKYIKNVQSA
601: SDGCVTDE

Arabidopsis Description

DHADDihydroxy-acid dehydratase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.