CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU78269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23940.1	OQU78269	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049929_P002	Maize	plastid	98.14	96.35
Zm00001d031929_P005	Maize	plastid	98.48	95.1
Os08t0559600-01	Rice	plastid	95.26	94.78
TraesCS7D01G279300.1	Wheat	plastid	93.06	92.59
TraesCS7A01G280700.1	Wheat	plastid	92.89	92.42
TraesCS7B01G180500.1	Wheat	plastid	92.72	92.26
GSMUA_Achr4P05470_001	Banana	cytosol, mitochondrion, plastid	73.6	90.25
HORVU7Hr1G059460.4	Barley	mitochondrion, peroxisome, plastid	89.68	87.75
KRH20898	Soybean	nucleus	81.9	80.53
PGSC0003DMT400049308	Potato	plastid	81.39	78.72
Solyc05g053540.2.1	Tomato	endoplasmic reticulum, nucleus, plastid	81.39	78.72
Solyc12g043020.1.1	Tomato	plastid	81.22	78.05
VIT_05s0051g00830.t01	Wine grape	plastid	79.19	76.72
CDY46350	Canola	plastid	77.83	76.03
AT3G23940.1	Thale cress	plastid	78.17	75.99
CDY18059	Canola	plastid	78.0	75.7
Bra028367.1-P	Field mustard	plastid	77.83	75.53
Bra015023.1-P	Field mustard	plastid	77.67	75.12
CDX77443	Canola	plastid	77.67	75.12
CDY45563	Canola	plastid	77.67	75.12
PGSC0003DMT400073716	Potato	cytosol	14.38	74.56

Protein Annotations

KEGG:00290+4.2.1.9	KEGG:00770+4.2.1.9	Gene3D:3.50.30.80	MapMan:4.1.2.2.8.5	MapMan:4.1.3.2.3	EntrezGene:8057977
UniProt:C5YN64	InterPro:DiOHA_6PGluconate_deHydtase	InterPro:DiOHA_6PGluconate_deHydtase_CS	InterPro:DihydroxyA_deHydtase	EnsemblPlants:EES15173	ProteinID:EES15173
ProteinID:EES15173.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004160	GO:GO:0005488	GO:GO:0005507
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009082	GO:GO:0009507	GO:GO:0009536
GO:GO:0009553	GO:GO:0009555	GO:GO:0009570	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987
GO:GO:0048364	InterPro:IlvD/EDD_N	HAMAP:MF_00012	PFAM:PF00920	ScanProsite:PS00886	ScanProsite:PS00887
PANTHER:PTHR21000	PANTHER:PTHR21000:SF17	MetaCyc:PWY-5101	MetaCyc:PWY-5103	MetaCyc:PWY-5104	MetaCyc:PWY-7111
EnsemblPlantsGene:SORBI_3007G167800	SUPFAM:SSF143975	SUPFAM:SSF52016	unigene:Sbi.2254	TIGRFAMs:TIGR00110	UniParc:UPI0001A87D6F
RefSeq:XP_002445678.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:60290952..60296201

Molecular Weight (calculated)

63184.5 Da

IEP (calculated)

6.885

GRAVY (calculated)

-0.102

Length

591 amino acids

Sequence
(BLAST)

001: MQSMALTSPS LPAAGPVTGR RLQRVRATAV SDEPKLNKYS ARITEPKSQG ASQAVLYGVG LTDADLRKPQ VGVSSVWYEG NTCNMHLLRL AEAVRDGVRE
101: AGMVGFRFNT VGVSDAISMG TRGMCYSLQS RDLIADSIET VMGAQHYDAN ISIPGCDKNM PGTIMAMGRL NRPSIMIYGG TIKPGHFQGN SYDIVSAFQC
201: YGEYVSGSIT DEQRKNVLRN SCPGAGACGG MYTANTMASA IETLGMSLPY SSSTPAEDPL KLEECHLAGK YLLELLKMDL KPKDIITEKS LRNAMVIVMA
301: LGGSTNAVLH LIAIARSVGL HLTLDDFQKV SDQVPFLADL KPSGKYVMED LHKIGGTPAV IHYLLEQGLL DGDCMTVTGK TLAENAKIFP PLSEGQQIIR
401: PLDNPIKSTG HIQILYGNLA PEGSVAKITG KEGLFFSGPA LVFEGEESMI TAISENPANF KGKVVVIRGE GPKGGPGMPE MLTPTSAIMG AGLGKECALL
501: TDGRFSGGSH GFVVGHICPE AQEGGPIGLV QSGDVITIDV SKRVIDVDLT EQQLEERRRK WTPPPYKSTR GALWKYIKLV APASRGCVTD E

Best Arabidopsis Sequence Match ( AT3G23940.1 )
(BLAST)

001: MQATIFSPRA TLFPCKPLLP SHNVNSRRPS IISCSAQSVT ADPSPPITDT NKLNKYSSRI TEPKSQGGSQ AILHGVGLSD DDLLKPQIGI SSVWYEGNTC
101: NMHLLKLSEA VKEGVENAGM VGFRFNTIGV SDAISMGTRG MCFSLQSRDL IADSIETVMS AQWYDGNISI PGCDKNMPGT IMAMGRLNRP GIMVYGGTIK
201: PGHFQDKTYD IVSAFQSYGE FVSGSISDEQ RKTVLHHSCP GAGACGGMYT ANTMASAIEA MGMSLPYSSS IPAEDPLKLD ECRLAGKYLL ELLKMDLKPR
301: DIITPKSLRN AMVSVMALGG STNAVLHLIA IARSVGLELT LDDFQKVSDA VPFLADLKPS GKYVMEDIHK IGGTPAVLRY LLELGLMDGD CMTVTGQTLA
401: QNLENVPSLT EGQEIIRPLS NPIKETGHIQ ILRGDLAPDG SVAKITGKEG LYFSGPALVF EGEESMLAAI SADPMSFKGT VVVIRGEGPK GGPGMPEMLT
501: PTSAIMGAGL GKECALLTDG RFSGGSHGFV VGHICPEAQE GGPIGLIKNG DIITIDIGKK RIDTQVSPEE MNDRRKKWTA PAYKVNRGVL YKYIKNVQSA
601: SDGCVTDE

Arabidopsis Description

DHADDihydroxy-acid dehydratase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.