Factsheet for VIT_05s0051g00830.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P05470_001	Banana	cytosol, mitochondrion, plastid	68.03	86.1
Solyc12g043020.1.1	Tomato	plastid	81.64	80.98
PGSC0003DMT400049308	Potato	plastid	80.82	80.69
KRH20898	Soybean	nucleus	79.34	80.53
Solyc05g053540.2.1	Tomato	endoplasmic reticulum, nucleus, plastid	80.33	80.2
PGSC0003DMT400073716	Potato	cytosol	14.92	79.82
EES15173	Sorghum	plastid	76.72	79.19
TraesCS7B01G180500.1	Wheat	plastid	76.89	78.96
Os08t0559600-01	Rice	plastid	76.89	78.96
AT3G23940.1	Thale cress	plastid	78.69	78.95
CDY46350	Canola	plastid	78.2	78.84
TraesCS7D01G279300.1	Wheat	plastid	76.72	78.79
TraesCS7A01G280700.1	Wheat	plastid	76.56	78.62
Bra015023.1-P	Field mustard	plastid	78.52	78.4
CDX77443	Canola	plastid	78.52	78.4
CDY45563	Canola	plastid	78.36	78.23
Bra028367.1-P	Field mustard	plastid	77.87	78.0
Zm00001d049929_P002	Maize	plastid	76.89	77.91
CDY18059	Canola	plastid	77.7	77.83
HORVU7Hr1G059460.4	Barley	mitochondrion, peroxisome, plastid	76.39	77.15
Zm00001d031929_P005	Maize	plastid	76.39	76.14

Protein Annotations

KEGG:00290+4.2.1.9	KEGG:00770+4.2.1.9	EntrezGene:100242520	wikigene:100242520	Gene3D:3.50.30.80	MapMan:4.1.2.2.8.5
MapMan:4.1.3.2.3	ProteinID:CCB57526	ProteinID:CCB57526.1	InterPro:DiOHA_6PGluconate_deHydtase	InterPro:DiOHA_6PGluconate_deHydtase_CS	InterPro:DihydroxyA_deHydtase
UniProt:F6HS67	EMBL:FN596241	GO:GO:0003674	GO:GO:0003824	GO:GO:0004160	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009082	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	InterPro:IlvD/EDD_N	EntrezGene:LOC100242520
wikigene:LOC100242520	HAMAP:MF_00012	PFAM:PF00920	ScanProsite:PS00886	ScanProsite:PS00887	PANTHER:PTHR21000
PANTHER:PTHR21000:SF17	SUPFAM:SSF143975	SUPFAM:SSF52016	TIGR:TC67148	TIGRFAMs:TIGR00110	UniParc:UPI0001983440
ArrayExpress:VIT_05s0051g00830	EnsemblPlantsGene:VIT_05s0051g00830	EnsemblPlants:VIT_05s0051g00830.t01	unigene:Vvi.4844	RefSeq:XP_002285667	RefSeq:XP_002285667.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:11894204..11921247

Molecular Weight (calculated)

65415.3 Da

IEP (calculated)

6.789

GRAVY (calculated)

-0.102

Length

610 amino acids

Sequence
(BLAST)

001: MQAALITPSP RAIPTGSITA TRTTIPPHVR LVSVRASTEV AQSPPPAVKE TAHKLNKYSS HVTEPKSQGG SQAILYGVGL SDEDMHKPQI GISSVWYEGN
101: TCNMHLLKLS EAVKEGVRDA GMVGFRFNTV GVSDAISMGT RGMCYSLQSR DLIADSIETV MSAQWYDGNI SIPGCDKNMP GTIMAMGRLN RPSIMVYGGA
201: IKPGHFQGHT YDIISAFQVY GEFVSGSITD EQRMNVVRNS CPGAGACGGM YTANTMASAI EVMGMSLPFS SSTPAEDPLK LHECHLAGKY LLDLIKMDLK
301: PRDIITMKSL RNAMVVVMAL GGSTNAVLHL IAIARSVGLQ LTLDDFQKVS DEVPFLADLK PSGKYVMEDI HKIGGTPAII RFLLENGFLD GDCITVTGKT
401: LAENAELFPS LPRDQQIIRP LANPIKKTGH LQTLYGNLAP EGSVAKITGK EGLYFSGPAL VFEGEEAMIA AIAENPMSFK GKVVIIRGEG PKGGPGMPEM
501: LTPTSAIMGA GLGKDVALLT DGRFSGGSHG YVVGHICPEA HEGGPIGLIE NGDIITIDVQ KRRMDVQLTD EEMNERRKKW SPPPYKANQG VLYKYIKNVK
601: SASDGCVTDE

Best Arabidopsis Sequence Match ( AT3G23940.1 )
(BLAST)

001: MQATIFSPRA TLFPCKPLLP SHNVNSRRPS IISCSAQSVT ADPSPPITDT NKLNKYSSRI TEPKSQGGSQ AILHGVGLSD DDLLKPQIGI SSVWYEGNTC
101: NMHLLKLSEA VKEGVENAGM VGFRFNTIGV SDAISMGTRG MCFSLQSRDL IADSIETVMS AQWYDGNISI PGCDKNMPGT IMAMGRLNRP GIMVYGGTIK
201: PGHFQDKTYD IVSAFQSYGE FVSGSISDEQ RKTVLHHSCP GAGACGGMYT ANTMASAIEA MGMSLPYSSS IPAEDPLKLD ECRLAGKYLL ELLKMDLKPR
301: DIITPKSLRN AMVSVMALGG STNAVLHLIA IARSVGLELT LDDFQKVSDA VPFLADLKPS GKYVMEDIHK IGGTPAVLRY LLELGLMDGD CMTVTGQTLA
401: QNLENVPSLT EGQEIIRPLS NPIKETGHIQ ILRGDLAPDG SVAKITGKEG LYFSGPALVF EGEESMLAAI SADPMSFKGT VVVIRGEGPK GGPGMPEMLT
501: PTSAIMGAGL GKECALLTDG RFSGGSHGFV VGHICPEAQE GGPIGLIKNG DIITIDIGKK RIDTQVSPEE MNDRRKKWTA PAYKVNRGVL YKYIKNVQSA
601: SDGCVTDE

Arabidopsis Description

DHADDihydroxy-acid dehydratase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.