Factsheet for Solyc12g043020.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073716	Potato	cytosol	18.37	99.12
Solyc05g053540.2.1	Tomato	endoplasmic reticulum, nucleus, plastid	89.43	90.02
GSMUA_Achr4P05470_001	Banana	cytosol, mitochondrion, plastid	67.97	86.72
AT3G23940.1	Thale cress	plastid	80.98	81.91
VIT_05s0051g00830.t01	Wine grape	plastid	80.98	81.64
EES15173	Sorghum	plastid	78.05	81.22
CDY46350	Canola	plastid	79.84	81.16
CDY45563	Canola	plastid	80.33	80.85
Os08t0559600-01	Rice	plastid	78.05	80.81
Bra015023.1-P	Field mustard	plastid	80.16	80.69
CDX77443	Canola	plastid	80.16	80.69
Bra028367.1-P	Field mustard	plastid	79.84	80.62
CDY18059	Canola	plastid	79.67	80.46
TraesCS7B01G180500.1	Wheat	plastid	77.4	80.13
TraesCS7D01G279300.1	Wheat	plastid	77.4	80.13
TraesCS7A01G280700.1	Wheat	plastid	77.24	79.97
KRH20898	Soybean	nucleus	77.89	79.7
Zm00001d049929_P002	Maize	plastid	77.89	79.57
Zm00001d031929_P005	Maize	plastid	77.56	77.94
HORVU7Hr1G059460.4	Barley	mitochondrion, peroxisome, plastid	76.42	77.81

Protein Annotations

KEGG:00290+4.2.1.9	KEGG:00770+4.2.1.9	Gene3D:3.50.30.80	MapMan:4.1.2.2.8.5	MapMan:4.1.3.2.3	InterPro:DiOHA_6PGluconate_deHydtase
InterPro:DiOHA_6PGluconate_deHydtase_CS	InterPro:DihydroxyA_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004160	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009082	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	InterPro:IlvD/EDD_N	UniProt:K4DF90
HAMAP:MF_00012	PFAM:PF00920	ScanProsite:PS00886	ScanProsite:PS00887	PANTHER:PTHR21000	PANTHER:PTHR21000:SF17
SUPFAM:SSF143975	SUPFAM:SSF52016	EnsemblPlantsGene:Solyc12g043020.1	EnsemblPlants:Solyc12g043020.1.1	TIGRFAMs:TIGR00110	UniParc:UPI000276943F
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:39246269..39259162

Molecular Weight (calculated)

65911.7 Da

IEP (calculated)

6.584

GRAVY (calculated)

-0.136

Length

615 amino acids

Sequence
(BLAST)

001: MQAHLLSPTI YPATTTTSPL FPKCRTHLRK PPTLTIRASS TETSTPPPQT STSTDPSQQL NKYSSRITQP KSQGGSQAIL YGVGLTDEDM NKPQIGISSV
101: WYEGNTCNMH LLKLAEAVKE GVTEAGMVGF RFNTIGVSDA ISMGTRGMCF SLQSRDLIAD SIETVMSAQW YDGNIAIPGC DKNMPGTIMA MGRLNRPSIM
201: IYGGTIKPGH FQGHTFDIVS AFQVYGEYVS GAVSDEQRMN VVRNSCPGAG ACGGMYTANT MASAIEAMGM SLPYSSSTPA EDSLKLDECR LAGKYLMELL
301: KMDLKPRDII TKKSLRNAMV VVMALGGSTN AVLHLIAIAR SVGLELTLDD FQKVSDEVPF LADLKPSGKY VMEDVHKIGG TPAVIRHLLE LGYMDGDCMT
401: VTGKTLAENA KLFPSLAEGQ QIIRPLSNPI KETGHIQILY GNLAPEGSVA KITGKEGLYF SGPALVFEGE EAMLAAISED PLSFKGKVVV IRGEGPKGGP
501: GMAEMLTPTS AIMGAGLGKD VALLTDGRFS GGSHGYVVGH ICPEAQEGGP IGLVQNGDII TIDIQKKKMD VQLSDEVLEQ RRKNWTPPAY KADRGVLYKY
601: IKNVQSASKG CVTDE

Best Arabidopsis Sequence Match ( AT3G23940.1 )
(BLAST)

001: MQATIFSPRA TLFPCKPLLP SHNVNSRRPS IISCSAQSVT ADPSPPITDT NKLNKYSSRI TEPKSQGGSQ AILHGVGLSD DDLLKPQIGI SSVWYEGNTC
101: NMHLLKLSEA VKEGVENAGM VGFRFNTIGV SDAISMGTRG MCFSLQSRDL IADSIETVMS AQWYDGNISI PGCDKNMPGT IMAMGRLNRP GIMVYGGTIK
201: PGHFQDKTYD IVSAFQSYGE FVSGSISDEQ RKTVLHHSCP GAGACGGMYT ANTMASAIEA MGMSLPYSSS IPAEDPLKLD ECRLAGKYLL ELLKMDLKPR
301: DIITPKSLRN AMVSVMALGG STNAVLHLIA IARSVGLELT LDDFQKVSDA VPFLADLKPS GKYVMEDIHK IGGTPAVLRY LLELGLMDGD CMTVTGQTLA
401: QNLENVPSLT EGQEIIRPLS NPIKETGHIQ ILRGDLAPDG SVAKITGKEG LYFSGPALVF EGEESMLAAI SADPMSFKGT VVVIRGEGPK GGPGMPEMLT
501: PTSAIMGAGL GKECALLTDG RFSGGSHGFV VGHICPEAQE GGPIGLIKNG DIITIDIGKK RIDTQVSPEE MNDRRKKWTA PAYKVNRGVL YKYIKNVQSA
601: SDGCVTDE

Arabidopsis Description

DHADDihydroxy-acid dehydratase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.