CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 1
plastid 8

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23940.1	CDY32970	AT5G42980.1	15352244
AT3G23940.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18059	Canola	plastid	97.19	96.55
CDX77443	Canola	plastid	96.86	95.91
CDY45563	Canola	plastid	96.69	95.74
AT3G23940.1	Thale cress	plastid	93.72	93.26
PGSC0003DMT400073716	Potato	cytosol	15.7	83.33
GSMUA_Achr4P05470_001	Banana	cytosol, mitochondrion, plastid	65.29	81.95
Solyc12g043020.1.1	Tomato	plastid	81.16	79.84
PGSC0003DMT400049308	Potato	plastid	80.5	79.71
Solyc05g053540.2.1	Tomato	endoplasmic reticulum, nucleus, plastid	80.5	79.71
KRH20898	Soybean	nucleus	79.17	79.7
VIT_05s0051g00830.t01	Wine grape	plastid	78.84	78.2
Os08t0559600-01	Rice	plastid	76.69	78.11
TraesCS7B01G180500.1	Wheat	plastid	76.53	77.95
EES15173	Sorghum	plastid	76.03	77.83
TraesCS7D01G279300.1	Wheat	plastid	76.36	77.78
TraesCS7A01G280700.1	Wheat	plastid	76.2	77.61
Zm00001d049929_P002	Maize	plastid	76.03	76.41
HORVU7Hr1G059460.4	Barley	mitochondrion, peroxisome, plastid	75.87	75.99
Zm00001d031929_P005	Maize	plastid	75.7	74.84

Protein Annotations

KEGG:00290+4.2.1.9	KEGG:00770+4.2.1.9	Gene3D:3.50.30.80	MapMan:4.1.2.2.8.5	MapMan:4.1.3.2.3	GO:A0A078I644
UniProt:A0A078I644	EnsemblPlants:CDY46350	ProteinID:CDY46350	ProteinID:CDY46350.1	InterPro:DiOHA_6PGluconate_deHydtase	InterPro:DiOHA_6PGluconate_deHydtase_CS
InterPro:DihydroxyA_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004160	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009082	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00083772001	InterPro:IlvD/EDD_N	HAMAP:MF_00012
PFAM:PF00920	ScanProsite:PS00886	ScanProsite:PS00887	PANTHER:PTHR21000	PANTHER:PTHR21000:SF17	MetaCyc:PWY-5101
MetaCyc:PWY-5103	MetaCyc:PWY-5104	MetaCyc:PWY-7111	SUPFAM:SSF143975	SUPFAM:SSF52016	TIGRFAMs:TIGR00110
UniPathway:UPA00047	UniPathway:UPA00049	UniParc:UPI0004EF0A29	SEG:seg	:	:

Description

BnaC01g30200DBnaC01g30200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I644]

Coordinates

chrLK032662:-:113122..116432

Molecular Weight (calculated)

64611.2 Da

IEP (calculated)

6.781

GRAVY (calculated)

-0.110

Length

605 amino acids

Sequence
(BLAST)

001: MHATILSPRA TLFPSHNVHE SRRRRSTISC SVQPVTADPS PPPLTDSKKL NKYSSRITEP KSQGGSQAIL HGVGLSDDDL LKPQIGISSV WYEGNTCNMH
101: LLKLSEAVKE GVEGAGMVGF RFNTIGVSDA ISMGTRGMCF SLQSRDLIAD SIETVMSAQW YDGNISIPGC DKNMPGTIMA MGRLNRPGIM VYGGTIKPGH
201: FQEKTYDIVS AFQSYGEFVG GSISDEQRKT VLHNACPGAG ACGGMYTANT MASAIEAMGM SLPYSSSIPA EDPLKLDECR LAGKYLVELL KMDLKPRDII
301: TPKSLRNAMV TVMALGGSTN AVLHLIAIAR SVGLELTLDD FQKVSDAVPF LADLKPSGKY VMEDIHKIGG TPAVLRYLLE AGFMDGDCIT VTGQTLAQNL
401: ENVPRLPENQ VIIRPVSNPI KETGHIQILR GDLAPEGSVA KITGKEGLYF SGPALVFEGE ESMLAAISAD PMSFKGTVVV IRGEGPKGGP GMPEMLTPTS
501: AIMGAGLGKE CALLTDGRFS GGSHGFVVGH ICPEAQEGGP IGLVKNGDII TIDIGKKRID AQVSPEEMNE RRKKWTAPAY KVNRGVLYKY IKNVQSASAG
601: CVTDE

Best Arabidopsis Sequence Match ( AT3G23940.1 )
(BLAST)

001: MQATIFSPRA TLFPCKPLLP SHNVNSRRPS IISCSAQSVT ADPSPPITDT NKLNKYSSRI TEPKSQGGSQ AILHGVGLSD DDLLKPQIGI SSVWYEGNTC
101: NMHLLKLSEA VKEGVENAGM VGFRFNTIGV SDAISMGTRG MCFSLQSRDL IADSIETVMS AQWYDGNISI PGCDKNMPGT IMAMGRLNRP GIMVYGGTIK
201: PGHFQDKTYD IVSAFQSYGE FVSGSISDEQ RKTVLHHSCP GAGACGGMYT ANTMASAIEA MGMSLPYSSS IPAEDPLKLD ECRLAGKYLL ELLKMDLKPR
301: DIITPKSLRN AMVSVMALGG STNAVLHLIA IARSVGLELT LDDFQKVSDA VPFLADLKPS GKYVMEDIHK IGGTPAVLRY LLELGLMDGD CMTVTGQTLA
401: QNLENVPSLT EGQEIIRPLS NPIKETGHIQ ILRGDLAPDG SVAKITGKEG LYFSGPALVF EGEESMLAAI SADPMSFKGT VVVIRGEGPK GGPGMPEMLT
501: PTSAIMGAGL GKECALLTDG RFSGGSHGFV VGHICPEAQE GGPIGLIKNG DIITIDIGKK RIDTQVSPEE MNDRRKKWTA PAYKVNRGVL YKYIKNVQSA
601: SDGCVTDE

Arabidopsis Description

DHADDihydroxy-acid dehydratase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.