CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23940.1	CDY32970	AT5G42980.1	15352244
AT3G23940.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028367.1-P	Field mustard	plastid	99.51	99.51
CDY46350	Canola	plastid	96.55	97.19
CDX77443	Canola	plastid	96.22	95.91
CDY45563	Canola	plastid	96.06	95.74
AT3G23940.1	Thale cress	plastid	92.78	92.93
GSMUA_Achr4P05470_001	Banana	cytosol, mitochondrion, plastid	65.02	82.16
PGSC0003DMT400073716	Potato	cytosol	15.27	81.58
Solyc12g043020.1.1	Tomato	plastid	80.46	79.67
PGSC0003DMT400049308	Potato	plastid	79.64	79.38
Solyc05g053540.2.1	Tomato	endoplasmic reticulum, nucleus, plastid	79.47	79.21
KRH20898	Soybean	nucleus	78.0	79.03
Os08t0559600-01	Rice	plastid	76.35	78.28
TraesCS7B01G180500.1	Wheat	plastid	76.19	78.11
TraesCS7D01G279300.1	Wheat	plastid	76.19	78.11
EES15173	Sorghum	plastid	75.7	78.0
TraesCS7A01G280700.1	Wheat	plastid	75.86	77.78
VIT_05s0051g00830.t01	Wine grape	plastid	77.83	77.7
Zm00001d049929_P002	Maize	plastid	75.7	76.58
HORVU7Hr1G059460.4	Barley	mitochondrion, peroxisome, plastid	75.53	76.16
Zm00001d031929_P005	Maize	plastid	75.37	75.0

Protein Annotations

KEGG:00290+4.2.1.9	KEGG:00770+4.2.1.9	Gene3D:3.50.30.80	MapMan:4.1.2.2.8.5	MapMan:4.1.3.2.3	GO:A0A078FY76
UniProt:A0A078FY76	EnsemblPlants:CDY18059	ProteinID:CDY18059	ProteinID:CDY18059.1	InterPro:DiOHA_6PGluconate_deHydtase	InterPro:DiOHA_6PGluconate_deHydtase_CS
InterPro:DihydroxyA_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004160	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009082	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00002531001	InterPro:IlvD/EDD_N	HAMAP:MF_00012
PFAM:PF00920	ScanProsite:PS00886	ScanProsite:PS00887	PANTHER:PTHR21000	PANTHER:PTHR21000:SF17	MetaCyc:PWY-5101
MetaCyc:PWY-5103	MetaCyc:PWY-5104	MetaCyc:PWY-7111	SUPFAM:SSF143975	SUPFAM:SSF52016	TIGRFAMs:TIGR00110
UniPathway:UPA00047	UniPathway:UPA00049	UniParc:UPI0004EE9393	SEG:seg	:	:

Description

BnaA01g23200DBnaA01g23200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FY76]

Coordinates

chrLK032082:+:23129..27535

Molecular Weight (calculated)

65001.8 Da

IEP (calculated)

7.410

GRAVY (calculated)

-0.095

Length

609 amino acids

Sequence
(BLAST)

001: MHATILSPRA TLFPCKPLVP SYSRRRRRST ISCSVQPVTA DPSPPPLTDS SKKLNKYSSR ITEPKSQGGS QAILNGVGLS DGDLLKPQIG ISSVWYEGNT
101: CNMHLLKLSE AVKEGVEGAG MVGFRFNTIG VSDAISMGTR GMCFSLQSRD LIADSIETVM SAQWYDANIS IPGCDKNMPG TIMAMGRLNR PGIMVYGGTI
201: KPGHFQEKTY DIVSAFQSYG EFVGGSISDE QRKTVLHNAC PGAGACGGMY TANTMASAIE AMGMSLPYSS SIPAEDPLKL DECRLAGKYL VELLKMDLKP
301: RDIITPKSLR NAMVTVMALG GSTNAVLHLI AIARSVGLEL TLDDFQKVSD AVPFLADLKP SGKYVMEDIH KIGGTPAVLR YLLEAGFMDG DCITVTGQTL
401: AQNLENVPRL PENQVIIRPV SNPIKETGHI QILRGDLAPE GSVAKITGKE GLYFSGPALV FEGEESMLAA ISADPMSFKG TVVVIRGEGP KGGPGMPEML
501: TPTSAIMGAG LGKECALLTD GRFSGGSHGF VVGHICPEAQ EGGPIGLVKN GDIITIDIGK KRIDTQVSPE EMNERKRKWT APAYKVNRGV LYKYIKNVQS
601: ASAGCVTDE

Best Arabidopsis Sequence Match ( AT3G23940.1 )
(BLAST)

001: MQATIFSPRA TLFPCKPLLP SHNVNSRRPS IISCSAQSVT ADPSPPITDT NKLNKYSSRI TEPKSQGGSQ AILHGVGLSD DDLLKPQIGI SSVWYEGNTC
101: NMHLLKLSEA VKEGVENAGM VGFRFNTIGV SDAISMGTRG MCFSLQSRDL IADSIETVMS AQWYDGNISI PGCDKNMPGT IMAMGRLNRP GIMVYGGTIK
201: PGHFQDKTYD IVSAFQSYGE FVSGSISDEQ RKTVLHHSCP GAGACGGMYT ANTMASAIEA MGMSLPYSSS IPAEDPLKLD ECRLAGKYLL ELLKMDLKPR
301: DIITPKSLRN AMVSVMALGG STNAVLHLIA IARSVGLELT LDDFQKVSDA VPFLADLKPS GKYVMEDIHK IGGTPAVLRY LLELGLMDGD CMTVTGQTLA
401: QNLENVPSLT EGQEIIRPLS NPIKETGHIQ ILRGDLAPDG SVAKITGKEG LYFSGPALVF EGEESMLAAI SADPMSFKGT VVVIRGEGPK GGPGMPEMLT
501: PTSAIMGAGL GKECALLTDG RFSGGSHGFV VGHICPEAQE GGPIGLIKNG DIITIDIGKK RIDTQVSPEE MNDRRKKWTA PAYKVNRGVL YKYIKNVQSA
601: SDGCVTDE

Arabidopsis Description

DHADDihydroxy-acid dehydratase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.