Factsheet for PGSC0003DMT400073716

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
peroxisome 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P05470_001	Banana	cytosol, mitochondrion, plastid	78.07	18.46
Solyc12g043020.1.1	Tomato	plastid	99.12	18.37
PGSC0003DMT400049308	Potato	plastid	97.37	18.17
CDY46350	Canola	plastid	83.33	15.7
Bra015023.1-P	Field mustard	plastid	83.33	15.55
CDX77443	Canola	plastid	83.33	15.55
CDY45563	Canola	plastid	83.33	15.55
AT3G23940.1	Thale cress	plastid	82.46	15.46
Bra028367.1-P	Field mustard	plastid	82.46	15.44
CDY18059	Canola	plastid	81.58	15.27
VIT_05s0051g00830.t01	Wine grape	plastid	79.82	14.92
KRH20898	Soybean	nucleus	76.32	14.48
EES15173	Sorghum	plastid	74.56	14.38
Os08t0559600-01	Rice	plastid	74.56	14.31
TraesCS7A01G280700.1	Wheat	plastid	74.56	14.31
TraesCS7B01G180500.1	Wheat	plastid	73.68	14.14
TraesCS7D01G279300.1	Wheat	plastid	73.68	14.14
Zm00001d049929_P002	Maize	plastid	74.56	14.12
HORVU7Hr1G059460.4	Barley	mitochondrion, peroxisome, plastid	72.81	13.74
Zm00001d031929_P005	Maize	plastid	72.81	13.56

Protein Annotations

EnsemblPlants:PGSC0003DMT400073716	EnsemblPlantsGene:PGSC0003DMG400028636	Gene3D:3.50.30.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	InterPro:DiOHA_6PGluconate_deHydtase	InterPro:DiOHA_6PGluconate_deHydtase_CS	KEGG:00290+4.2.1.9	KEGG:00770+4.2.1.9	PANTHER:PTHR21000
PANTHER:PTHR21000:SF17	PFAM:PF00920	PGSC:PGSC0003DMG400028636	ScanProsite:PS00887	SUPFAM:SSF52016	UniParc:UPI0002956E52
UniProt:M1CSJ1	MapMan:35.1	:	:	:	:

Description

Dehydratase family [Source:PGSC_GENE;Acc:PGSC0003DMG400028636]

Coordinates

chr12:+:50172938..50174815

Molecular Weight (calculated)

12253.7 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.275

Length

114 amino acids

Sequence
(BLAST)

001: MAEMLTPTSA IMGAGLGKDV ALLTDGRFSG GSHGYVVGHI CPEAQEGGPI GLVQNGDIIT IDIQKKKMDV QLSDEVLEQR RKNWTAPAYK ADRGVLYKYI
101: KNVQSASKGC VTDE

Best Arabidopsis Sequence Match ( AT3G23940.2 )
(BLAST)

001: MQATIFSPRA TLFPCKPLLP SHNVNSRRPS IISCSAQSVT ADPSPPITDT NKLNKYSSRI TEPKSQGGSQ AILHGVGLSD DDLLKPQIGI SSVWYEGNTC
101: NMHLLKLSEA VKEGVENAGM VGFRFNTIGV SDAISMGTRG MCFSLQSRDL IADSIETVMS AQWYDGNISI PGCDKNMPGT IMAMGRLNRP GIMVYGGTIK
201: PGHFQDKTYD IVSAFQSYGE FVSGSISDEQ RKTVLHHSCP GAGACGGMYT ANTMASAIEA MGMSLPYSSS IPAEDPLKLD ECRLAGKYLL ELLKMDLKPR
301: DIITPKSLRN AMVSVMALGG STNAVLHLIA IARSVGLELT LDDFQKVSDA VPFLADLKPS GKYVMEDIHK IGGTPAVLRY LLELGLMDGD CMTGQTLAQN
401: LENVPSLTEG QEIIRPLSNP IKETGHIQIL RGDLAPDGSV AKITGKEGLY FSGPALVFEG EESMLAAISA DPMSFKGTVV VIRGEGPKGG PGMPEMLTPT
501: SAIMGAGLGK ECALLTDGRF SGGSHGFVVG HICPEAQEGG PIGLIKNGDI ITIDIGKKRI DTQVSPEEMN DRRKKWTAPA YKVNRGVLYK YIKNVQSASD
601: GCVTDE

Arabidopsis Description

DHADDihydroxy-acid dehydratase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.