CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P05470_001	Banana	cytosol, mitochondrion, plastid	68.39	85.27
EES15173	Sorghum	plastid	80.53	81.9
Os08t0559600-01	Rice	plastid	80.2	81.14
Zm00001d049929_P002	Maize	plastid	80.2	80.07
TraesCS7D01G279300.1	Wheat	plastid	79.03	79.97
TraesCS7B01G180500.1	Wheat	plastid	79.03	79.97
TraesCS7A01G280700.1	Wheat	plastid	78.87	79.8
AT3G23940.1	Thale cress	plastid	80.53	79.61
VIT_05s0051g00830.t01	Wine grape	plastid	80.53	79.34
CDY46350	Canola	plastid	79.7	79.17
Solyc05g053540.2.1	Tomato	endoplasmic reticulum, nucleus, plastid	80.37	79.05
Zm00001d031929_P005	Maize	plastid	80.2	78.76
PGSC0003DMT400049308	Potato	plastid	80.03	78.72
Bra028367.1-P	Field mustard	plastid	79.2	78.16
HORVU7Hr1G059460.4	Barley	mitochondrion, peroxisome, plastid	78.54	78.15
CDY45563	Canola	plastid	79.37	78.07
CDY18059	Canola	plastid	79.03	78.0
Bra015023.1-P	Field mustard	plastid	79.2	77.91
CDX77443	Canola	plastid	79.2	77.91
Solyc12g043020.1.1	Tomato	plastid	79.7	77.89
PGSC0003DMT400073716	Potato	cytosol	14.48	76.32

Protein Annotations

KEGG:00290+4.2.1.9	KEGG:00770+4.2.1.9	Gene3D:3.50.30.80	MapMan:4.1.2.2.8.5	MapMan:4.1.3.2.3	EMBL:ACUP02008324
InterPro:DiOHA_6PGluconate_deHydtase	InterPro:DiOHA_6PGluconate_deHydtase_CS	InterPro:DihydroxyA_deHydtase	EnsemblPlantsGene:GLYMA_13G207900	GO:GO:0003674	GO:GO:0003824
GO:GO:0004160	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009082	GO:GO:0009507	GO:GO:0009536	GO:GO:0009553	GO:GO:0009555	GO:GO:0009570
GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0048364	UniProt:I1M137	InterPro:IlvD/EDD_N
EnsemblPlants:KRH20898	ProteinID:KRH20898	ProteinID:KRH20898.1	HAMAP:MF_00012	PFAM:PF00920	ScanProsite:PS00886
ScanProsite:PS00887	PANTHER:PTHR21000	PANTHER:PTHR21000:SF17	MetaCyc:PWY-5101	MetaCyc:PWY-5103	MetaCyc:PWY-5104
MetaCyc:PWY-7111	SUPFAM:SSF143975	SUPFAM:SSF52016	TIGRFAMs:TIGR00110	UniParc:UPI0000154FEA	SEG:seg

Description

hypothetical protein

Coordinates

chr13:+:32155914..32163168

Molecular Weight (calculated)

64119.2 Da

IEP (calculated)

5.997

GRAVY (calculated)

-0.090

Length

601 amino acids

Sequence
(BLAST)

001: MQSTLFNPTH SLIPTSPHSI RSNSGHASLS VRASIAVETP TETVKLNKYS SRITEPKSQG ASQAVLYGVG LSEDDMAKPQ VGVSSVWYEG NTCNMHLLHL
101: SEAVRDGVAA AGMVPFRFNT VGVSDAISMG TRGMCYSLQS RDLIADSIET VMAAQWYDGN ISIPGCDKNM PGTIIAMGRL NRPSIMVYGG TIKPGHFEGN
201: TFDIVSAFQC YGEYVSGSIN DDQRQNVIRN SCPGAGACGG MYTANTMASA IEAMGMSLPY SSSTPAEDPL KLDECRLAGK YLLELLKMDL KPRDIITRKS
301: LRNAMVIVMA LGGSTNAVLH LIAIAKSVGI DLTLDDFQKV SDEVPFIADL KPSGKYVMED VHKIGGTPAV IRYLLEQGFL DGDCMTVTGK TLAENAELVP
401: PLSNGQEIIR PVENPIKKTA HIQILYGNLA PQGSVAKITG KEGLYFSGPA LVFEGEEAMI AAISEDPSSF KGKVVVIRGE GPKGGPGMPE MLTPTSAIMG
501: AGLGKEVALL TDGRFSGGSH GFVVGHICPE AQEGGPIGLI QNGDVINVDI KNRRIDVLVS DEEMEARRKK WTAPPYKANR GALYKYIKNV TPASSGCVTD
601: E

Best Arabidopsis Sequence Match ( AT3G23940.1 )
(BLAST)

001: MQATIFSPRA TLFPCKPLLP SHNVNSRRPS IISCSAQSVT ADPSPPITDT NKLNKYSSRI TEPKSQGGSQ AILHGVGLSD DDLLKPQIGI SSVWYEGNTC
101: NMHLLKLSEA VKEGVENAGM VGFRFNTIGV SDAISMGTRG MCFSLQSRDL IADSIETVMS AQWYDGNISI PGCDKNMPGT IMAMGRLNRP GIMVYGGTIK
201: PGHFQDKTYD IVSAFQSYGE FVSGSISDEQ RKTVLHHSCP GAGACGGMYT ANTMASAIEA MGMSLPYSSS IPAEDPLKLD ECRLAGKYLL ELLKMDLKPR
301: DIITPKSLRN AMVSVMALGG STNAVLHLIA IARSVGLELT LDDFQKVSDA VPFLADLKPS GKYVMEDIHK IGGTPAVLRY LLELGLMDGD CMTVTGQTLA
401: QNLENVPSLT EGQEIIRPLS NPIKETGHIQ ILRGDLAPDG SVAKITGKEG LYFSGPALVF EGEESMLAAI SADPMSFKGT VVVIRGEGPK GGPGMPEMLT
501: PTSAIMGAGL GKECALLTDG RFSGGSHGFV VGHICPEAQE GGPIGLIKNG DIITIDIGKK RIDTQVSPEE MNDRRKKWTA PAYKVNRGVL YKYIKNVQSA
601: SDGCVTDE

Arabidopsis Description

DHADDihydroxy-acid dehydratase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.