Factsheet for Solyc05g053540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, nucleus

Predictor Summary:

mitochondrion 2
plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049308	Potato	plastid	98.04	98.04
Solyc12g043020.1.1	Tomato	plastid	90.02	89.43
GSMUA_Achr4P05470_001	Banana	cytosol, mitochondrion, plastid	68.41	86.72
EES15173	Sorghum	plastid	78.72	81.39
Os08t0559600-01	Rice	plastid	79.05	81.31
AT3G23940.1	Thale cress	plastid	80.36	80.76
CDY46350	Canola	plastid	79.71	80.5
KRH20898	Soybean	nucleus	79.05	80.37
VIT_05s0051g00830.t01	Wine grape	plastid	80.2	80.33
Zm00001d049929_P002	Maize	plastid	78.89	80.07
TraesCS7B01G180500.1	Wheat	plastid	77.74	79.97
TraesCS7D01G279300.1	Wheat	plastid	77.74	79.97
CDY45563	Canola	plastid	79.87	79.87
CDX77443	Canola	plastid	79.87	79.87
Bra015023.1-P	Field mustard	plastid	79.87	79.87
TraesCS7A01G280700.1	Wheat	plastid	77.58	79.8
Bra028367.1-P	Field mustard	plastid	79.38	79.64
CDY18059	Canola	plastid	79.21	79.47
Zm00001d031929_P005	Maize	plastid	78.72	78.59
HORVU7Hr1G059460.4	Barley	mitochondrion, peroxisome, plastid	76.76	77.65

Protein Annotations

KEGG:00290+4.2.1.9	KEGG:00770+4.2.1.9	Gene3D:3.50.30.80	MapMan:4.1.2.2.8.5	MapMan:4.1.3.2.3	InterPro:DiOHA_6PGluconate_deHydtase
InterPro:DiOHA_6PGluconate_deHydtase_CS	InterPro:DihydroxyA_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004160	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009082	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	InterPro:IlvD/EDD_N	UniProt:K4C234
HAMAP:MF_00012	PFAM:PF00920	ScanProsite:PS00886	ScanProsite:PS00887	PANTHER:PTHR21000	PANTHER:PTHR21000:SF17
SUPFAM:SSF143975	SUPFAM:SSF52016	EnsemblPlantsGene:Solyc05g053540.2	EnsemblPlants:Solyc05g053540.2.1	TIGRFAMs:TIGR00110	UniParc:UPI0002766512
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:63618515..63625450

Molecular Weight (calculated)

65548.4 Da

IEP (calculated)

6.513

GRAVY (calculated)

-0.138

Length

611 amino acids

Sequence
(BLAST)

001: MQASLLSPPL HPTTQKIPSF NIQCRPYHSR LPPTLTIRAA GAPPETTNST TPSQKLNKFS SRITEPKSQG GSQAILYGVG LSDDDMKKPQ IGISSVWYEG
101: NTCNMHLLKL AEAVKEGVQE ADMVGFRFNT IGVSDAISMG TRGMCFSLQS RDLIADSIET VMSAQWYDGN IAIPGCDKNM PGTIMAMGRL NRPSIMIYGG
201: TIKPGHFQGH TFDIVSAFQV YGEYVSGGVS DEQRMNVVRN SCPGAGACGG MYTANTMASA IETLGMSLPY SSSTPAEDPL KLDECRLAGK YLLELLKMDL
301: KPRDIITKSS LRNAMVMVMA LGGSTNAVLH LIAIARSVGL ELTLDDFQKV SDEVPFLADL KPSGKYVMED VHKIGGTPAV IRHLLELGYL DGDCMTVTGK
401: TLAENAKLFP SLAEGQQIIR PLSNPIKETG HIQILYGNLA PEGSVAKITG KEGMYFKGPA LVFEGEEAMI AAISEDPLSF KGKVVVIRGE GPKGGPGMPE
501: MLTPTSAIMG AGLGKDVALL TDGRFSGGSH GYVVGHICPE AQEGGPIGLV QNGDIIAIDI QKKKMDVQLS DEELELRRKN WTPPAYKADR GVLHKYIKNV
601: QSASKGCVTD E

Best Arabidopsis Sequence Match ( AT3G23940.1 )
(BLAST)

001: MQATIFSPRA TLFPCKPLLP SHNVNSRRPS IISCSAQSVT ADPSPPITDT NKLNKYSSRI TEPKSQGGSQ AILHGVGLSD DDLLKPQIGI SSVWYEGNTC
101: NMHLLKLSEA VKEGVENAGM VGFRFNTIGV SDAISMGTRG MCFSLQSRDL IADSIETVMS AQWYDGNISI PGCDKNMPGT IMAMGRLNRP GIMVYGGTIK
201: PGHFQDKTYD IVSAFQSYGE FVSGSISDEQ RKTVLHHSCP GAGACGGMYT ANTMASAIEA MGMSLPYSSS IPAEDPLKLD ECRLAGKYLL ELLKMDLKPR
301: DIITPKSLRN AMVSVMALGG STNAVLHLIA IARSVGLELT LDDFQKVSDA VPFLADLKPS GKYVMEDIHK IGGTPAVLRY LLELGLMDGD CMTVTGQTLA
401: QNLENVPSLT EGQEIIRPLS NPIKETGHIQ ILRGDLAPDG SVAKITGKEG LYFSGPALVF EGEESMLAAI SADPMSFKGT VVVIRGEGPK GGPGMPEMLT
501: PTSAIMGAGL GKECALLTDG RFSGGSHGFV VGHICPEAQE GGPIGLIKNG DIITIDIGKK RIDTQVSPEE MNDRRKKWTA PAYKVNRGVL YKYIKNVQSA
601: SDGCVTDE

Arabidopsis Description

DHADDihydroxy-acid dehydratase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.