Factsheet for Bra028367.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23940.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18059	Canola	plastid	99.51	99.51
Bra015023.1-P	Field mustard	plastid	96.39	96.07
AT3G23940.1	Thale cress	plastid	92.94	93.09
PGSC0003DMT400073716	Potato	cytosol	15.44	82.46
GSMUA_Achr4P05470_001	Banana	cytosol, mitochondrion, plastid	65.02	82.16
Solyc12g043020.1.1	Tomato	plastid	80.62	79.84
PGSC0003DMT400049308	Potato	plastid	79.8	79.54
Solyc05g053540.2.1	Tomato	endoplasmic reticulum, nucleus, plastid	79.64	79.38
KRH20898	Soybean	nucleus	78.16	79.2
Os08t0559600-01	Rice	plastid	76.19	78.11
TraesCS7B01G180500.1	Wheat	plastid	76.03	77.95
TraesCS7D01G279300.1	Wheat	plastid	76.03	77.95
VIT_05s0051g00830.t01	Wine grape	plastid	78.0	77.87
EES15173	Sorghum	plastid	75.53	77.83
TraesCS7A01G280700.1	Wheat	plastid	75.7	77.61
Zm00001d049929_P002	Maize	plastid	75.53	76.41
HORVU7Hr1G059460.4	Barley	mitochondrion, peroxisome, plastid	75.37	75.99
Zm00001d031929_P005	Maize	plastid	75.21	74.84

Protein Annotations

KEGG:00290+4.2.1.9	KEGG:00770+4.2.1.9	Gene3D:3.50.30.80	MapMan:4.1.2.2.8.5	MapMan:4.1.3.2.3	EnsemblPlantsGene:Bra028367
EnsemblPlants:Bra028367.1	EnsemblPlants:Bra028367.1-P	InterPro:DiOHA_6PGluconate_deHydtase	InterPro:DiOHA_6PGluconate_deHydtase_CS	InterPro:DihydroxyA_deHydtase	GO:GO:0003674
GO:GO:0003824	GO:GO:0004160	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009082
GO:GO:0009987	InterPro:IlvD/EDD_N	UniProt:M4EHV2	HAMAP:MF_00012	PFAM:PF00920	ScanProsite:PS00886
ScanProsite:PS00887	PANTHER:PTHR21000	PANTHER:PTHR21000:SF17	SUPFAM:SSF143975	SUPFAM:SSF52016	TIGRFAMs:TIGR00110
UniParc:UPI00025453E4	SEG:seg	:	:	:	:

Description

AT3G23940 (E=0.0) | dehydratase family

Coordinates

chrA01:+:18117465..18120307

Molecular Weight (calculated)

64999.9 Da

IEP (calculated)

7.214

GRAVY (calculated)

-0.084

Length

609 amino acids

Sequence
(BLAST)

001: MHATILSPRA TLFPCKPLVP SYSRRRRRST ISCSVQPVTA DPSPPPLTDS SKKLNKYSSR ITEPKSQGGS QAILHGVGLS DGDLLKPQIG ISSVWYEGNT
101: CNMHLLKLSE AVKEGVEGAG MVGFRFNTIG VSDAISMGTR GMCFSLQSRD LIADSIETVM SAQWYDANIS IPGCDKNMPG TIMAMGRLNR PGIMVYGGTI
201: KPGHFQEMTY DIVSAFQSYG EFVGGSISDE QRKTVLHNAC PGAGACGGMY TANTMASAIE AMGMSLPYSS SIPAEDPLKL DECRLAGKYL VELLKMDLKP
301: RDIITPKSLR NAMVTVMALG GSTNAVLHLI AIARSVGLEL TLDDFQKVSD AVPFLADLKP SGKYVMEDIH KIGGTPAVLR YLLEAGFMDG DCITVTGQTL
401: AQNLENVPRL PENQVIIRPV SNPIKETGHI QILRGDLAPE GSVAKITGKE GLYFSGPALV FEGEESMLAA ISADPMSFKG TVVVIRGEGP KGGPGMPEML
501: TPTSAIMGAG LGKECALLTD GRFSGGSHGF VVGHICPEAQ EGGPIGLVKN GDIITIDIGK KRIDTQVSPE EMNERKKKWT APAYKVNRGV LYKYIKNVQS
601: ASAGCVTDE

Best Arabidopsis Sequence Match ( AT3G23940.1 )
(BLAST)

001: MQATIFSPRA TLFPCKPLLP SHNVNSRRPS IISCSAQSVT ADPSPPITDT NKLNKYSSRI TEPKSQGGSQ AILHGVGLSD DDLLKPQIGI SSVWYEGNTC
101: NMHLLKLSEA VKEGVENAGM VGFRFNTIGV SDAISMGTRG MCFSLQSRDL IADSIETVMS AQWYDGNISI PGCDKNMPGT IMAMGRLNRP GIMVYGGTIK
201: PGHFQDKTYD IVSAFQSYGE FVSGSISDEQ RKTVLHHSCP GAGACGGMYT ANTMASAIEA MGMSLPYSSS IPAEDPLKLD ECRLAGKYLL ELLKMDLKPR
301: DIITPKSLRN AMVSVMALGG STNAVLHLIA IARSVGLELT LDDFQKVSDA VPFLADLKPS GKYVMEDIHK IGGTPAVLRY LLELGLMDGD CMTVTGQTLA
401: QNLENVPSLT EGQEIIRPLS NPIKETGHIQ ILRGDLAPDG SVAKITGKEG LYFSGPALVF EGEESMLAAI SADPMSFKGT VVVIRGEGPK GGPGMPEMLT
501: PTSAIMGAGL GKECALLTDG RFSGGSHGFV VGHICPEAQE GGPIGLIKNG DIITIDIGKK RIDTQVSPEE MNDRRKKWTA PAYKVNRGVL YKYIKNVQSA
601: SDGCVTDE

Arabidopsis Description

DHADDihydroxy-acid dehydratase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.