Factsheet for TraesCS3D01G359900.2

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid, unclear
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55800.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT3G55800.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT3G55800.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT3G55800.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT3G55800.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT3G55800.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G398300.1	Wheat	plastid	99.49	99.49
TraesCS3A01G367000.1	Wheat	plastid	98.98	98.98
Os04t0234600-01	Rice	plastid	93.89	94.13
EES01767	Sorghum	plastid	91.6	93.99
Zm00001d042840_P001	Maize	plastid	89.31	92.61
HORVU3Hr1G085270.8	Barley	plastid	94.15	92.5
GSMUA_Achr1P17270_001	Banana	plastid	79.39	79.19
VIT_13s0019g03350.t01	Wine grape	extracellular, plastid	78.63	78.63
Solyc05g052600.2.1	Tomato	plastid	77.86	77.67
PGSC0003DMT400069750	Potato	cytosol, extracellular, plastid	77.61	77.22
KRH31096	Soybean	plastid	75.83	77.0
KRG97781	Soybean	nucleus, plastid	75.57	76.74
CDY63439	Canola	cytosol	54.71	76.24
AT3G55800.1	Thale cress	plastid	75.83	75.83
Bra007192.1-P	Field mustard	plastid	75.57	75.57
CDX76072	Canola	plastid	75.57	75.38
Bra014720.1-P	Field mustard	plastid	75.32	75.13
CDX67626	Canola	plastid	75.32	75.13
CDY27264	Canola	plastid	75.06	75.06
CDY02960	Canola	plastid	75.06	74.87
CDX72200	Canola	plastid	75.06	74.87
Bra003221.1-P	Field mustard	plastid	57.25	71.2
KRH31099	Soybean	peroxisome	27.23	59.12
TraesCS3D01G370700.1	Wheat	cytosol	23.66	27.03
TraesCS1D01G274000.1	Wheat	cytosol	22.65	26.1
TraesCS1D01G274200.2	Wheat	cytosol	22.39	25.81
TraesCS4D01G212000.1	Wheat	plastid	23.92	22.98
TraesCS7D01G471600.1	Wheat	plastid	22.39	22.17

Protein Annotations

KEGG:00010+3.1.3.11	KEGG:00030+3.1.3.11	KEGG:00051+3.1.3.11	KEGG:00680+3.1.3.11	KEGG:00710+3.1.3.11	MapMan:1.2.8
Gene3D:3.30.540.10	Gene3D:3.40.190.80	InterPro:FBPase_N	InterPro:FBPase_class-1	InterPro:Fructose_bisphosphatase_AS	GO:GO:0003674
GO:GO:0003824	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0016791	GO:GO:0042578	HAMAP:MF_01855	PFAM:PF00316	PIRSF:PIRSF000904	PRINTS:PR01958
ScanProsite:PS00124	PANTHER:PTHR11556	PANTHER:PTHR11556:SF2	InterPro:SBPase	SUPFAM:SSF56655	EnsemblPlantsGene:TraesCS3D01G359900
EnsemblPlants:TraesCS3D01G359900.2	TIGR:cd00354	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3D:-:473609501..473612551

Molecular Weight (calculated)

42139.2 Da

IEP (calculated)

6.515

GRAVY (calculated)

-0.110

Length

393 amino acids

Sequence
(BLAST)

001: METVAAAGYA RGAATRSPAC CAAMSFSQSY RPKAARPATT FYGESLRANT ARTSFPAGRQ SKAASRAALT TRCAIGDSLE EFLTKATPDK NLIRLLICMG
101: EAMRTIAFKV RTASCGGTAC VNSFGDEQLA VDMLADKLLF EALEYSHVCK YACSEEVPEL QDMGGPVEGG FSVAFDPLDG SSIVDTNFTV GTIFGVWPGD
201: KLTGVTGGDQ VAAAMGIYGP RTTFVVALKD CPGTHEFLLL DEGKWQHVKD TTTIGEGKMF SPGNLRATFD NPDYDKLVNY YVKEKYTLRY TGGMVPDVNQ
301: IIVKEKGIFT NVTSPTAKAK LRLLFEVAPL GFLIEKAGGH SSDGKQSVLD KVISQLDERT QVAYGSKNEI IRFEETLYGS SRLAASATVG ATA

Best Arabidopsis Sequence Match ( AT3G55800.1 )
(BLAST)

001: METSIACYSR GILPPSVSSQ RSSTLVSPPS YSTSSSFKRL KSSSIFGDSL RLAPKSQLKA TKAKSNGAST VTKCEIGQSL EEFLAQATPD KGLRTLLMCM
101: GEALRTIAFK VRTASCGGTA CVNSFGDEQL AVDMLADKLL FEALQYSHVC KYACSEEVPE LQDMGGPVEG GFSVAFDPLD GSSIVDTNFT VGTIFGVWPG
201: DKLTGITGGD QVAAAMGIYG PRTTYVLAVK GFPGTHEFLL LDEGKWQHVK ETTEIAEGKM FSPGNLRATF DNSEYSKLID YYVKEKYTLR YTGGMVPDVN
301: QIIVKEKGIF TNVTSPTAKA KLRLLFEVAP LGLLIENAGG FSSDGHKSVL DKTIINLDDR TQVAYGSKNE IIRFEETLYG TSRLKNVPIG VTA

Arabidopsis Description

SBPASESedoheptulose-1,7-bisphosphatase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P46283]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.