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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 10
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
plastid: 20363867
extracellular: 22364583
plastid: 22908117
plastid: 25431925
extracellular: 26583031
plastid: 28183294
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 26583031 doi
F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken
Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 22364583 doi
P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez
Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.
msms PMID: 28183294 doi
R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti
Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.
msms PMID: 25431925 doi
S Muneer, YG Park, A Manivannan, P Soundararajan, BR Jeong
Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. abinayamanivannan@gmail.com., Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. brjeong@gmail.com., Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. iuyiuy09@naver.com., Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. prabhakaran.s.bioinfo@gmail.com., Division of Applied Life Science (BK21 Plus), Gyeongsang National University, Jinju 660-701, Korea. sobiyakhan126@gmail.com.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400069750 Potato cytosol, extracellular, plastid 98.73 98.48
VIT_13s0019g03350.t01 Wine grape extracellular, plastid 88.07 88.3
KRG97781 Soybean nucleus, plastid 84.26 85.79
KRH31096 Soybean plastid 84.01 85.53
CDX76072 Canola plastid 81.98 81.98
CDX72200 Canola plastid 81.73 81.73
CDY27264 Canola plastid 81.47 81.68
Bra014720.1-P Field mustard plastid 81.47 81.47
CDY02960 Canola plastid 81.47 81.47
GSMUA_Achr1P17270_001 Banana plastid 81.47 81.47
Bra007192.1-P Field mustard plastid 81.22 81.42
AT3G55800.1 Thale cress plastid 80.71 80.92
EES01767 Sorghum plastid 77.92 80.16
CDX67626 Canola plastid 79.7 79.7
Os04t0234600-01 Rice plastid 78.93 79.34
TraesCS3B01G398300.1 Wheat plastid 77.92 78.12
TraesCS3D01G359900.2 Wheat plastid, unclear 77.67 77.86
TraesCS3A01G367000.1 Wheat plastid 77.67 77.86
CDY63439 Canola cytosol 55.58 77.66
Zm00001d042840_P001 Maize plastid 74.62 77.57
Bra003221.1-P Field mustard plastid 61.17 76.27
HORVU3Hr1G085270.8 Barley plastid 74.62 73.5
KRH31099 Soybean peroxisome 26.9 58.56
Solyc04g071340.2.1 Tomato cytosol, nucleus, plastid 22.59 26.18
Solyc12g056530.1.1 Tomato plastid 22.08 25.59
Solyc01g106010.2.1 Tomato plastid 23.6 25.2
Solyc10g086720.1.1 Tomato cytosol 19.04 24.75
Solyc09g011810.2.1 Tomato plastid 23.6 23.08
Solyc10g086730.1.1 Tomato plastid 22.34 21.52
Protein Annotations
KEGG:00010+3.1.3.11KEGG:00030+3.1.3.11KEGG:00051+3.1.3.11KEGG:00680+3.1.3.11KEGG:00710+3.1.3.11MapMan:1.2.8
Gene3D:3.30.540.10Gene3D:3.40.190.80UniProt:C5IU71InterPro:FBPase_NInterPro:FBPase_class-1EMBL:FJ959073
InterPro:Fructose_bisphosphatase_ASGO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005975GO:GO:0005986GO:GO:0006000GO:GO:0006002GO:GO:0006094
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016311GO:GO:0016787
GO:GO:0016791GO:GO:0030388GO:GO:0042132GO:GO:0042578HAMAP:MF_01855PFAM:PF00316
PIRSF:PIRSF000904PRINTS:PR01958ScanProsite:PS00124PANTHER:PTHR11556PANTHER:PTHR11556:SF2InterPro:SBPase
SUPFAM:SSF56655EnsemblPlantsGene:Solyc05g052600.2EnsemblPlants:Solyc05g052600.2.1UniParc:UPI0001A92639SEG:seg:
Description
Chloroplast sedoheptulose-1,7-bisphosphatase [Source:UniProtKB/TrEMBL;Acc:C5IU71]
Coordinates
chr5:+:62807839..62811226
Molecular Weight (calculated)
42590.0 Da
IEP (calculated)
6.308
GRAVY (calculated)
-0.087
Length
394 amino acids
Sequence
(BLAST)
001: METGVTCCAR VTSLLPNVSS QQYSTSIATS RSISPSFNSR SLKSSSLFGE SLRVAPKSSL KVSRTKNSSL VTKCEIGDSL EEFLSKSTSD KGLIRLMMCM
101: GEALRTIAFK VRTASCGGTA CVNSFGDEQL AVDMLADKLL FEALTYSHFC KYACSEEVPE LQDMGGPAEG GFSVAFDPLD GSSIVDTNFT VGTIFGVWPG
201: DKLTGITGRE QVAAAMGIFG PRTTYVLALK DVPGTHEFLL LDEGKWQHVK DTTEIGEGKM FSPGNLRATF DNPDYAKLIE YYVKEKYTLR YTGGMVPDVN
301: QIIVKEKGIF TNVTSPTAKA KLRLLFEVAP LGFLIEKAGG YSSDGKQSVL DKVIVNLDDR TQVAYGSKNE IIRFEETLYG SSRLKAGAPV GAAV
Best Arabidopsis Sequence Match ( AT3G55800.1 )
(BLAST)
001: METSIACYSR GILPPSVSSQ RSSTLVSPPS YSTSSSFKRL KSSSIFGDSL RLAPKSQLKA TKAKSNGAST VTKCEIGQSL EEFLAQATPD KGLRTLLMCM
101: GEALRTIAFK VRTASCGGTA CVNSFGDEQL AVDMLADKLL FEALQYSHVC KYACSEEVPE LQDMGGPVEG GFSVAFDPLD GSSIVDTNFT VGTIFGVWPG
201: DKLTGITGGD QVAAAMGIYG PRTTYVLAVK GFPGTHEFLL LDEGKWQHVK ETTEIAEGKM FSPGNLRATF DNSEYSKLID YYVKEKYTLR YTGGMVPDVN
301: QIIVKEKGIF TNVTSPTAKA KLRLLFEVAP LGLLIENAGG FSSDGHKSVL DKTIINLDDR TQVAYGSKNE IIRFEETLYG TSRLKNVPIG VTA
Arabidopsis Description
SBPASESedoheptulose-1,7-bisphosphatase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P46283]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.