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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • cytosol 5
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plastid: 22908117
plastid: 28183294
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 28183294 doi
R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti
Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400027988 Potato cytosol 99.41 99.41
Solyc04g071340.2.1 Tomato cytosol, nucleus, plastid 94.12 94.12
VIT_18s0072g00770.t01 Wine grape cytosol 92.35 92.63
Bra005526.1-P Field mustard cytosol 76.18 90.56
KRH08703 Soybean cytosol, nucleus 90.88 90.35
GSMUA_Achr8P07890_001 Banana cytosol 90.59 90.32
GSMUA_Achr1P17000_001 Banana cytosol 88.53 88.79
AT1G43670.1 Thale cress cytosol 88.53 88.27
Os01t0866400-01 Rice cytosol, extracellular, plasma membrane 87.94 88.2
CDY58803 Canola cytosol 87.35 88.13
Bra014005.1-P Field mustard cytosol 87.06 87.83
CDY19443 Canola cytosol 83.53 87.65
KXG33753 Sorghum cytosol 87.94 87.17
KXG22100 Sorghum cytosol 87.06 86.8
CDY64046 Canola cytosol 87.65 86.13
Zm00001d042727_P001 Maize cytosol 86.18 85.42
TraesCS1A01G273900.1 Wheat cytosol 85.59 85.34
TraesCS1D01G274000.1 Wheat cytosol 85.29 85.04
TraesCS1B01G283600.1 Wheat cytosol 85.0 84.75
TraesCS3B01G410400.1 Wheat golgi 85.59 84.59
TraesCS3A01G377600.1 Wheat cytosol 85.59 84.59
TraesCS3D01G370700.1 Wheat cytosol 85.59 84.59
TraesCS1D01G274200.2 Wheat cytosol 83.82 83.58
HORVU1Hr1G074330.14 Barley cytosol 84.41 83.43
CDY17136 Canola cytosol 87.65 83.24
Zm00001d010172_P004 Maize cytosol 85.59 77.39
Solyc10g086720.1.1 Tomato cytosol 44.12 49.51
Solyc09g011810.2.1 Tomato plastid 52.35 44.17
Solyc10g086730.1.1 Tomato plastid 46.18 38.39
GSMUA_Achr5P26140_001 Banana plastid 48.53 37.41
Solyc01g106010.2.1 Tomato plastid 35.88 33.06
CDY67108 Canola cytosol 72.35 27.95
Solyc05g052600.2.1 Tomato plastid 25.59 22.08
Protein Annotations
KEGG:00010+3.1.3.11KEGG:00030+3.1.3.11KEGG:00051+3.1.3.11KEGG:00680+3.1.3.11KEGG:00710+3.1.3.11MapMan:3.1.2.3
MapMan:3.10.3Gene3D:3.30.540.10Gene3D:3.40.190.80InterPro:FBPase_NInterPro:FBPase_class-1InterPro:FBPtase
InterPro:Fructose_bisphosphatase_ASGO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005829GO:GO:0005975GO:GO:0005986GO:GO:0006000GO:GO:0006002
GO:GO:0006094GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016311
GO:GO:0016787GO:GO:0016791GO:GO:0030388GO:GO:0042132GO:GO:0042578UniProt:K4DFY4
HAMAP:MF_01855PFAM:PF00316PIRSF:PIRSF000904PIRSF:PIRSF500210PRINTS:PR00115ScanProsite:PS00124
PANTHER:PTHR11556PANTHER:PTHR11556:SF19SUPFAM:SSF56655EnsemblPlantsGene:Solyc12g056530.1EnsemblPlants:Solyc12g056530.1.1UniParc:UPI000276A038
SEG:seg:::::
Description
No Description!
Coordinates
chr12:-:62481346..62484886
Molecular Weight (calculated)
37281.8 Da
IEP (calculated)
5.935
GRAVY (calculated)
-0.167
Length
340 amino acids
Sequence
(BLAST)
001: MDHAADAHRT DLMTITRFVL NEQSKYPESR GDFTILLSHI VLGCKFVCTA VNKAGLAKLL GLAGETNVQG EDQKKLDVLS NEVFIKALVS SGRTCILVSE
101: EDEEATFVEP SKRGKYCVVF DPLDGSSNID CGVSIGTIFG IYMMKDVHEP TLDDVLQPGK NMLAAGYCMY GSSCTLVLST GKGVNGFTLD PSLGEFILTH
201: PDIKIPKKGK IYSVNEGNAK NWDGPTSKYV ESCKFPTDGS SPKSLRYIGS MVADVHRTLL YGGIFLYPAD KKSPNGKLRV LYEVFPMSFL MEQAGGQAFT
301: GKERALDLVP TKIHERAPIF LGSYDDVEEI KRLYAAEEKN
Best Arabidopsis Sequence Match ( AT1G43670.1 )
(BLAST)
001: MDHAADAHRT DLMTITRFVL NEQSKYPESR GDFTILLSHI VLGCKFVCSA VNKAGLAKLI GLAGETNIQG EEQKKLDVLS NDVFVNALVS SGRTSVLVSE
101: EDEEATFVEP SKRGKYCVVF DPLDGSSNID CGVSIGTIFG IYTLDHTDEP TTADVLKPGN EMVAAGYCMY GSSCMLVLST GTGVHGFTLD PSLGEFILTH
201: PDIKIPNKGN IYSVNEGNAQ NWDGPTTKYV EKCKFPKDGS PAKSLRYVGS MVADVHRTLL YGGIFLYPAD KKSPNGKLRV LYEVFPMSFL MEQAGGQAFT
301: GKKRALDLVP EKIHERSPIF LGSYDDVEEI KALYAEEEKK N
Arabidopsis Description
CYFBPFructose-1,6-bisphosphatase, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9MA79]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.