Factsheet for Solyc01g106010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083786	Potato	plastid	97.29	97.29
VIT_03s0038g00370.t01	Wine grape	cytosol	77.51	79.01
KRH42081	Soybean	plastid	74.53	68.75
KRH49837	Soybean	plastid	73.98	68.25
Bra024291.1-P	Field mustard	plastid	72.36	65.76
CDY58267	Canola	plastid	72.36	65.76
HORVU7Hr1G109280.3	Barley	cytosol	64.77	65.66
EER90172	Sorghum	plastid	70.46	65.66
AT5G64380.1	Thale cress	plastid	71.82	65.59
Os06t0664200-01	Rice	plastid	71.0	65.34
TraesCS7A01G484200.1	Wheat	plastid	68.83	64.96
Zm00001d046942_P001	Maize	plastid	69.65	64.57
TraesCS7D01G471600.1	Wheat	plastid	69.38	64.48
TraesCS7B01G387900.1	Wheat	plastid	69.38	64.32
CDX84521	Canola	cytosol	72.36	61.66
GSMUA_Achr11P...	Banana	plastid	72.63	45.19
Solyc10g086720.1.1	Tomato	cytosol	33.06	40.26
Solyc09g011810.2.1	Tomato	plastid	39.3	35.98
Solyc12g056530.1.1	Tomato	plastid	33.06	35.88
Solyc04g071340.2.1	Tomato	cytosol, nucleus, plastid	33.06	35.88
Solyc10g086730.1.1	Tomato	plastid	37.94	34.23
Solyc05g052600.2.1	Tomato	plastid	25.2	23.6

Protein Annotations

KEGG:00010+3.1.3.11	KEGG:00030+3.1.3.11	KEGG:00051+3.1.3.11	KEGG:00680+3.1.3.11	KEGG:00710+3.1.3.11	Gene3D:3.30.540.10
Gene3D:3.40.190.80	MapMan:50.3.1	InterPro:FBPase_N	InterPro:FBPase_class-1	InterPro:FBPtase	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005975	GO:GO:0005986	GO:GO:0006000	GO:GO:0006002	GO:GO:0006094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0016791
GO:GO:0030388	GO:GO:0042132	UniProt:K4B2H0	HAMAP:MF_01855	PFAM:PF00316	PIRSF:PIRSF000904
PIRSF:PIRSF500210	PRINTS:PR00115	PANTHER:PTHR11556	PANTHER:PTHR11556:SF12	SUPFAM:SSF56655	EnsemblPlantsGene:Solyc01g106010.2
EnsemblPlants:Solyc01g106010.2.1	UniParc:UPI0002767527	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:93995458..93997611

Molecular Weight (calculated)

40043.7 Da

IEP (calculated)

6.042

GRAVY (calculated)

-0.121

Length

369 amino acids

Sequence
(BLAST)

001: MASSPFSGGL INSRVDSPIA IGCKNASVDS ANSGFSTLME YMGKGGVDVG DDLVLLFGHL EYASKKIAAL VACPFNSSLN NNVAIGNTGT SSDRDKPKPL
101: DIVSNEIILS SLRNSGKVAV MASEEDECPV WITDDGPFVV VMDPLDGSRN IDASIPTGTI FGIYRRLVEI DHLPVEEKAL LNCLQSGSKL VAAAYVLYSS
201: ATILCASFGS GTHAFTLDHT TGDFLLTHPN INIPPRGQIY SVNDARYFDW PEGLRQYIDT IRQGKGQHPK KYSARYICSL VADFHRTLLY GGVAMNPRNH
301: LRLVYEANPL SFLAEKAGGR GSDGKNRILS IQPVKLHQRL PLFLGSLEDI EELQSYGDVQ QKVNPGYDV

Best Arabidopsis Sequence Match ( AT5G64380.1 )
(BLAST)

001: MQSLTLTRYP TPISPPRLNL YPLRQIAASV LSAPTAGINR RDMASRHQST SFKPLAVGRN LTGDDDDGYC TLIDFAGSGG GEGKNVGEDL VVLLYHLQHA
101: CKRIASLVAS PFNSSLGKLS VNSSSGSDRD APKPLDIVSN DIVLSSLRNS GKVAVMASEE NDSPTWIKDD GPYVVVVDPL DGSRNIDASI PTGTIFGIYN
201: RLVELDHLPV EEKAELNSLQ RGSRLVASGY VLYSSATIFC VTLGSGTHAF TLDHSTGEFV LTHQNIKIPT RGQIYSVNDA RYFDWPEGLR KYIDTVRQGK
301: GQNPKKYSAR YICSLVADLH RTLLYGGVAM NPRDHLRLVY EGNPLAFLVE QAGGKSSDGK RGILSIQPVK LHQRLPLFLG SLEDVAELES YGDVQQTVNP
401: GYEV

Arabidopsis Description

AT5g64380/MSJ1_22 [Source:UniProtKB/TrEMBL;Acc:Q9FMF1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.