CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58267	Canola	plastid	88.22	94.09
AT5G64380.1	Thale cress	plastid	83.14	89.11
VIT_03s0038g00370.t01	Wine grape	cytosol	64.2	76.8
Solyc01g106010.2.1	Tomato	plastid	61.66	72.36
PGSC0003DMT400083786	Potato	plastid	61.43	72.09
KRH42081	Soybean	plastid	65.36	70.75
KRH49837	Soybean	plastid	65.13	70.5
EER90172	Sorghum	plastid	60.28	65.91
Os06t0664200-01	Rice	plastid	60.51	65.34
TraesCS7A01G484200.1	Wheat	plastid	58.43	64.71
Zm00001d046942_P001	Maize	plastid	59.35	64.57
HORVU7Hr1G109280.3	Barley	cytosol	53.81	64.01
TraesCS7D01G471600.1	Wheat	plastid	58.66	63.98
TraesCS7B01G387900.1	Wheat	plastid	58.66	63.82
GSMUA_Achr11P...	Banana	plastid	62.82	45.87
CDY19443	Canola	cytosol	30.02	40.12
CDY58803	Canola	cytosol	30.48	39.17
CDY64046	Canola	cytosol	30.25	37.86
CDX76171	Canola	plastid	35.57	37.38
CDY13182	Canola	plastid	35.33	37.23
CDY17136	Canola	cytosol	30.72	37.15
CDY66557	Canola	plastid	35.1	36.45
CDY60767	Canola	plastid	34.64	36.06
CDY60769	Canola	plastid	34.41	35.99
CDY07558	Canola	mitochondrion, vacuole	16.4	34.98
CDY27264	Canola	plastid	20.32	22.39
CDX72200	Canola	plastid	20.32	22.34
CDY63439	Canola	cytosol	14.32	21.99
CDY02960	Canola	plastid	19.63	21.57
CDX76072	Canola	plastid	19.63	21.57
CDX67626	Canola	plastid	19.63	21.57
CDY67108	Canola	cytosol	29.1	14.32

Protein Annotations

KEGG:00010+3.1.3.11	KEGG:00030+3.1.3.11	KEGG:00051+3.1.3.11	KEGG:00680+3.1.3.11	KEGG:00710+3.1.3.11	Gene3D:3.30.540.10
Gene3D:3.40.190.80	MapMan:50.3.1	GO:A0A078D5F8	EnsemblPlants:CDX84521	ProteinID:CDX84521	ProteinID:CDX84521.1
InterPro:FBPase_N	InterPro:FBPase_class-1	InterPro:FBPtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0016791	GO:GO:0042132
EnsemblPlantsGene:GSBRNA2T00141755001	HAMAP:MF_01855	PFAM:PF00316	PRINTS:PR00115	PANTHER:PTHR11556	PANTHER:PTHR11556:SF12
MetaCyc:PWY-5484	SUPFAM:SSF56655	UniPathway:UPA00138	UniParc:UPI0004EECB60	SEG:seg	:

Description

BnaC03g49790D

Coordinates

chrLK031837:+:1588228..1590580

Molecular Weight (calculated)

47217.8 Da

IEP (calculated)

5.852

GRAVY (calculated)

-0.267

Length

433 amino acids

Sequence
(BLAST)

001: MLWLWNTSSR EAYPDERLES SANALNSEKI MQSLPTTLYP TSVSPPSLDL YPLRQTVSSV LSPPTAGYNR RGMVSRGESA SFKPLAARQT SISGDGDGYC
101: TLVDFAGYGG GGANVGDDLV VLLYHLQHAC KRIASLVASP FNSSLGKLSV NSSTGSDRDA PKPLDIVSND IILSSLRNSG KVAVMASEED DTPTWIKDDG
201: PYVVVVDPLD GSRNIDASIP TGTIFGIYNR LVELDHLPVE EKAELNSLQR GNRLVASGYV LYSSATILCV TLGSGTHAFT LDHSTGEFVL THQNIKIPPR
301: GQIYSVNDAR YFDWPEGLRK YIDTVRQGKG QNPKKYSARY ICSLVADLHR TLLYGGVAMN PRDHLRLVYE GNPLAYLVEQ SGGKASDGKR EILSIQPVKL
401: HQRLPLFLGS VEDVTELESY GDVQQTVNPG YEV

Best Arabidopsis Sequence Match ( AT5G64380.1 )
(BLAST)

001: MQSLTLTRYP TPISPPRLNL YPLRQIAASV LSAPTAGINR RDMASRHQST SFKPLAVGRN LTGDDDDGYC TLIDFAGSGG GEGKNVGEDL VVLLYHLQHA
101: CKRIASLVAS PFNSSLGKLS VNSSSGSDRD APKPLDIVSN DIVLSSLRNS GKVAVMASEE NDSPTWIKDD GPYVVVVDPL DGSRNIDASI PTGTIFGIYN
201: RLVELDHLPV EEKAELNSLQ RGSRLVASGY VLYSSATIFC VTLGSGTHAF TLDHSTGEFV LTHQNIKIPT RGQIYSVNDA RYFDWPEGLR KYIDTVRQGK
301: GQNPKKYSAR YICSLVADLH RTLLYGGVAM NPRDHLRLVY EGNPLAFLVE QAGGKSSDGK RGILSIQPVK LHQRLPLFLG SLEDVAELES YGDVQQTVNP
401: GYEV

Arabidopsis Description

AT5g64380/MSJ1_22 [Source:UniProtKB/TrEMBL;Acc:Q9FMF1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.