Factsheet for Solyc04g071340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061951	Potato	cytosol	99.12	99.12
Solyc12g056530.1.1	Tomato	plastid	94.12	94.12
VIT_18s0072g00770.t01	Wine grape	cytosol	90.59	90.86
GSMUA_Achr8P07890_001	Banana	cytosol	89.12	88.86
Bra005526.1-P	Field mustard	cytosol	74.41	88.46
KRH08703	Soybean	cytosol, nucleus	87.94	87.43
KXG22100	Sorghum	cytosol	87.35	87.1
GSMUA_Achr1P17000_001	Banana	cytosol	86.47	86.73
Os01t0866400-01	Rice	cytosol, extracellular, plasma membrane	85.88	86.14
AT1G43670.1	Thale cress	cytosol	86.18	85.92
CDY58803	Canola	cytosol	85.0	85.76
KXG33753	Sorghum	cytosol	86.47	85.71
CDY19443	Canola	cytosol	81.47	85.49
Bra014005.1-P	Field mustard	cytosol	84.71	85.46
TraesCS1A01G273900.1	Wheat	cytosol	85.29	85.04
TraesCS1D01G274000.1	Wheat	cytosol	84.71	84.46
TraesCS1B01G283600.1	Wheat	cytosol	84.71	84.46
CDY64046	Canola	cytosol	85.29	83.81
Zm00001d042727_P001	Maize	cytosol	84.41	83.67
TraesCS1D01G274200.2	Wheat	cytosol	83.53	83.28
HORVU1Hr1G074330.14	Barley	cytosol	84.12	83.14
TraesCS3A01G377600.1	Wheat	cytosol	84.12	83.14
TraesCS3B01G410400.1	Wheat	golgi	84.12	83.14
TraesCS3D01G370700.1	Wheat	cytosol	84.12	83.14
CDY17136	Canola	cytosol	85.59	81.28
Zm00001d010172_P004	Maize	cytosol	85.59	77.39
Solyc10g086720.1.1	Tomato	cytosol	44.12	49.51
Solyc09g011810.2.1	Tomato	plastid	52.06	43.92
Solyc10g086730.1.1	Tomato	plastid	46.76	38.88
GSMUA_Achr5P26140_001	Banana	plastid	47.65	36.73
Solyc01g106010.2.1	Tomato	plastid	35.88	33.06
CDY67108	Canola	cytosol	70.29	27.16
Solyc05g052600.2.1	Tomato	plastid	26.18	22.59

Protein Annotations

KEGG:00010+3.1.3.11	KEGG:00030+3.1.3.11	KEGG:00051+3.1.3.11	KEGG:00680+3.1.3.11	KEGG:00710+3.1.3.11	MapMan:3.1.2.3
MapMan:3.10.3	Gene3D:3.30.540.10	Gene3D:3.40.190.80	InterPro:FBPase_N	InterPro:FBPase_class-1	InterPro:FBPtase
InterPro:Fructose_bisphosphatase_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0005986	GO:GO:0006000	GO:GO:0006002
GO:GO:0006094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016311
GO:GO:0016787	GO:GO:0016791	GO:GO:0030388	GO:GO:0042132	GO:GO:0042578	UniProt:K4BTC6
HAMAP:MF_01855	PFAM:PF00316	PIRSF:PIRSF000904	PIRSF:PIRSF500210	PRINTS:PR00115	ScanProsite:PS00124
PANTHER:PTHR11556	PANTHER:PTHR11556:SF19	SUPFAM:SSF56655	EnsemblPlantsGene:Solyc04g071340.2	EnsemblPlants:Solyc04g071340.2.1	UniParc:UPI0002766840
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:58267265..58271868

Molecular Weight (calculated)

37100.4 Da

IEP (calculated)

5.237

GRAVY (calculated)

-0.164

Length

340 amino acids

Sequence
(BLAST)

001: MDHAADAHRT DLMTITRFVL NEQTKHPESR GDFSILLSHI VLGCKFVCTA VNKAGLAKLL GLAGETNVQG EDQKKLDVLS NEVFIKALVS SGRTCILVSE
101: EDEEATFVEP ANRGKYCVVF DPLDGSSNID CGVSIGTIFG IYMIKDGHEP TLDDVLQPGM NMLAAGYCMY GSSCTLVLST GSGVNGFTLD PSLGEFILTH
201: ADIKIPKKGK IYSVNEGNAK NWDGPTSKYV QNCKYPADGS SPKSLRYIGS MVADVHRTLL YGGIFLYPGD KKSPNGKLRV LYEVFPMSFL MEQAGGQAFT
301: GKQRALDLVP EKIHERSPIF LGSYDDVEEI KNLYAAEEQN

Best Arabidopsis Sequence Match ( AT1G43670.1 )
(BLAST)

001: MDHAADAHRT DLMTITRFVL NEQSKYPESR GDFTILLSHI VLGCKFVCSA VNKAGLAKLI GLAGETNIQG EEQKKLDVLS NDVFVNALVS SGRTSVLVSE
101: EDEEATFVEP SKRGKYCVVF DPLDGSSNID CGVSIGTIFG IYTLDHTDEP TTADVLKPGN EMVAAGYCMY GSSCMLVLST GTGVHGFTLD PSLGEFILTH
201: PDIKIPNKGN IYSVNEGNAQ NWDGPTTKYV EKCKFPKDGS PAKSLRYVGS MVADVHRTLL YGGIFLYPAD KKSPNGKLRV LYEVFPMSFL MEQAGGQAFT
301: GKKRALDLVP EKIHERSPIF LGSYDDVEEI KALYAEEEKK N

Arabidopsis Description

CYFBPFructose-1,6-bisphosphatase, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9MA79]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.