Factsheet for PGSC0003DMT400069750

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g052600.2.1	Tomato	plastid	98.48	98.73
VIT_13s0019g03350.t01	Wine grape	extracellular, plastid	87.59	88.04
KRG97781	Soybean	nucleus, plastid	84.05	85.79
KRH31096	Soybean	plastid	83.54	85.27
CDX76072	Canola	plastid	82.28	82.49
CDX72200	Canola	plastid	82.03	82.23
CDY27264	Canola	plastid	81.77	82.19
Bra014720.1-P	Field mustard	plastid	81.77	81.98
CDY02960	Canola	plastid	81.77	81.98
Bra007192.1-P	Field mustard	plastid	81.52	81.93
AT3G55800.1	Thale cress	plastid	81.01	81.42
GSMUA_Achr1P17270_001	Banana	plastid	80.76	80.96
CDX67626	Canola	plastid	80.0	80.2
EES01767	Sorghum	plastid	77.47	79.9
Os04t0234600-01	Rice	plastid	78.48	79.08
CDY63439	Canola	cytosol	55.7	78.01
TraesCS3B01G398300.1	Wheat	plastid	77.47	77.86
TraesCS3D01G359900.2	Wheat	plastid, unclear	77.22	77.61
TraesCS3A01G367000.1	Wheat	plastid	77.22	77.61
Zm00001d042840_P001	Maize	plastid	74.18	77.31
Bra003221.1-P	Field mustard	plastid	61.77	77.22
HORVU3Hr1G085270.8	Barley	plastid	74.18	73.25
KRH31099	Soybean	peroxisome	26.84	58.56
PGSC0003DMT400061951	Potato	cytosol	22.53	26.18
PGSC0003DMT400027988	Potato	cytosol	22.03	25.59
PGSC0003DMT400083786	Potato	plastid	23.29	24.93
PGSC0003DMT400052463	Potato	cytosol	23.8	23.04
PGSC0003DMT400049394	Potato	mitochondrion, plastid	22.53	21.76
PGSC0003DMT400049395	Potato	plastid	22.28	21.57

Protein Annotations

KEGG:00010+3.1.3.11	KEGG:00030+3.1.3.11	KEGG:00051+3.1.3.11	KEGG:00680+3.1.3.11	KEGG:00710+3.1.3.11	MapMan:1.2.8
EntrezGene:102583431	Gene3D:3.30.540.10	Gene3D:3.40.190.80	InterPro:FBPase_N	InterPro:FBPase_class-1	InterPro:Fructose_bisphosphatase_AS
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	GO:GO:0042578	UniProt:M1CL27	HAMAP:MF_01855
PFAM:PF00316	EnsemblPlantsGene:PGSC0003DMG400027125	PGSC:PGSC0003DMG400027125	EnsemblPlants:PGSC0003DMT400069750	PIRSF:PIRSF000904	PRINTS:PR01958
ScanProsite:PS00124	PANTHER:PTHR11556	PANTHER:PTHR11556:SF2	InterPro:SBPase	SUPFAM:SSF56655	UniParc:UPI00029675E6
RefSeq:XP_006355654.1	SEG:seg	:	:	:	:

Description

Chloroplast sedoheptulose-1,7-bisphosphatase [Source:PGSC_GENE;Acc:PGSC0003DMG400027125]

Coordinates

chr5:+:47883736..47886923

Molecular Weight (calculated)

42718.1 Da

IEP (calculated)

6.307

GRAVY (calculated)

-0.091

Length

395 amino acids

Sequence
(BLAST)

001: METSVTCCAR ATSLLPNVSS QQYSTSLATS RSISQPSFNS RSLKSSSLFG ESLRVAPKSS LKVSRTKNSS LVTKCEIGDS LEEFLSKSTS DKGLIRLMMC
101: MGEALRTIAF KVRTASCGGT ACVNSFGDEQ LAVDMLADKL LFEALTYSHF CKYACSEEVP ELQDMGGPAE GGFSVAFDPL DGSSIVDTNF TVGTIFGVWP
201: GDKLTGITGR EQVAAAMGIF GPRTTYVLAL KDVPGTHEFL LLDEGKWQHV KDTTEIGEGK MFSPGNLRAT FDNPDYAKLI DYYVKEKYTL RYTGGMVPDV
301: NQIIVKEKGI FTNVISPTAK AKLRLLFEVA PLGFLIEKAG GYSSDGKQSV LDKVIVNLDD RTQVAYGSKN EIIRFEETLY GSSRLKAGAP VGAAV

Best Arabidopsis Sequence Match ( AT3G55800.1 )
(BLAST)

001: METSIACYSR GILPPSVSSQ RSSTLVSPPS YSTSSSFKRL KSSSIFGDSL RLAPKSQLKA TKAKSNGAST VTKCEIGQSL EEFLAQATPD KGLRTLLMCM
101: GEALRTIAFK VRTASCGGTA CVNSFGDEQL AVDMLADKLL FEALQYSHVC KYACSEEVPE LQDMGGPVEG GFSVAFDPLD GSSIVDTNFT VGTIFGVWPG
201: DKLTGITGGD QVAAAMGIYG PRTTYVLAVK GFPGTHEFLL LDEGKWQHVK ETTEIAEGKM FSPGNLRATF DNSEYSKLID YYVKEKYTLR YTGGMVPDVN
301: QIIVKEKGIF TNVTSPTAKA KLRLLFEVAP LGLLIENAGG FSSDGHKSVL DKTIINLDDR TQVAYGSKNE IIRFEETLYG TSRLKNVPIG VTA

Arabidopsis Description

SBPASESedoheptulose-1,7-bisphosphatase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P46283]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.