Factsheet for Zm00001d042840_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d038652_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55800.1	Zm00001d038652_P003	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01767	Sorghum	plastid	94.99	93.99
Os04t0234600-01	Rice	plastid	93.67	90.56
TraesCS3D01G359900.2	Wheat	plastid, unclear	92.61	89.31
TraesCS3B01G398300.1	Wheat	plastid	92.35	89.06
TraesCS3A01G367000.1	Wheat	plastid	92.08	88.8
HORVU3Hr1G085270.8	Barley	plastid	87.07	82.5
GSMUA_Achr1P17270_001	Banana	plastid	78.89	75.89
VIT_13s0019g03350.t01	Wine grape	extracellular, plastid	78.36	75.57
CDY63439	Canola	cytosol	55.94	75.18
Solyc05g052600.2.1	Tomato	plastid	77.57	74.62
PGSC0003DMT400069750	Potato	cytosol, extracellular, plastid	77.31	74.18
KRH31096	Soybean	plastid	74.93	73.39
KRG97781	Soybean	nucleus, plastid	74.41	72.87
Bra007192.1-P	Field mustard	plastid	75.46	72.77
CDX76072	Canola	plastid	75.46	72.59
CDY27264	Canola	plastid	75.2	72.52
Bra014720.1-P	Field mustard	plastid	75.2	72.33
AT3G55800.1	Thale cress	plastid	74.93	72.26
CDY02960	Canola	plastid	74.93	72.08
CDX72200	Canola	plastid	74.93	72.08
CDX67626	Canola	plastid	74.93	72.08
Bra003221.1-P	Field mustard	plastid	56.99	68.35
KRH31099	Soybean	peroxisome	28.23	59.12
Zm00001d042727_P001	Maize	cytosol	22.96	25.36
Zm00001d010172_P004	Maize	cytosol	23.48	23.67
Zm00001d028562_P001	Maize	plastid	24.01	22.03
Zm00001d046942_P001	Maize	plastid	22.96	21.86

Protein Annotations

KEGG:00010+3.1.3.11	KEGG:00030+3.1.3.11	KEGG:00051+3.1.3.11	KEGG:00680+3.1.3.11	KEGG:00710+3.1.3.11	MapMan:1.2.8
Gene3D:3.30.540.10	Gene3D:3.40.190.80	UniProt:A0A1D6N713	InterPro:FBPase_N	InterPro:FBPase_class-1	InterPro:Fructose_bisphosphatase_AS
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	GO:GO:0042578	ProteinID:ONM36378.1	PFAM:PF00316
PIRSF:PIRSF000904	PRINTS:PR01958	ScanProsite:PS00124	PANTHER:PTHR11556	PANTHER:PTHR11556:SF2	InterPro:SBPase
SUPFAM:SSF56655	UniParc:UPI0008428158	EnsemblPlantsGene:Zm00001d042840	EnsemblPlants:Zm00001d042840_P001	EnsemblPlants:Zm00001d042840_T001	SEG:seg

Description

sedoheptulose bisphosphatase1Sedoheptulose-17-bisphosphatase chloroplastic

Coordinates

chr3:-:181638640..181643200

Molecular Weight (calculated)

41166.2 Da

IEP (calculated)

6.743

GRAVY (calculated)

-0.128

Length

379 amino acids

Sequence
(BLAST)

001: MEIVATRSPA CCAAVSFSQS YRPKASRPPT TFYGESVRVN TARPLSARRQ SKAASRAALS ARCEIGDSLE EFLTKATPDK NLIRLLICMG EAMRTIAFKV
101: RTASCGGTAC VNSFGDEQLA VDMLANKLLF EALEYSHVCK YACSEEVPEL QDMGGPVEGG FSVAFDPLDG SSIVDTNFTV GTIFGVWPGD KLTGVTGGDQ
201: VAAAMGIYGP RTTYIVALKD CPGTHEFLLL DEGKWQHVKD TTTIGEGKMF SPGNLRATFD NPEYDKLINY YVKEKYTLRY TGGMIIVKEK GIFTNVTSPT
301: AKAKLRLLFE VAPLGFLMEK AGGYSSDGKQ SVLDRVINEL DERTQVAYGS KNEIIRFEET LYGSSRLAAS ATATARALI

Best Arabidopsis Sequence Match ( AT3G55800.1 )
(BLAST)

001: METSIACYSR GILPPSVSSQ RSSTLVSPPS YSTSSSFKRL KSSSIFGDSL RLAPKSQLKA TKAKSNGAST VTKCEIGQSL EEFLAQATPD KGLRTLLMCM
101: GEALRTIAFK VRTASCGGTA CVNSFGDEQL AVDMLADKLL FEALQYSHVC KYACSEEVPE LQDMGGPVEG GFSVAFDPLD GSSIVDTNFT VGTIFGVWPG
201: DKLTGITGGD QVAAAMGIYG PRTTYVLAVK GFPGTHEFLL LDEGKWQHVK ETTEIAEGKM FSPGNLRATF DNSEYSKLID YYVKEKYTLR YTGGMVPDVN
301: QIIVKEKGIF TNVTSPTAKA KLRLLFEVAP LGLLIENAGG FSSDGHKSVL DKTIINLDDR TQVAYGSKNE IIRFEETLYG TSRLKNVPIG VTA

Arabidopsis Description

SBPASESedoheptulose-1,7-bisphosphatase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P46283]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.